Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52280 100 / 5e-21 Myosin heavy chain-related protein (.1) AT1G22060 99 / 3e-20 unknown protein AT1G63300 73 / 2e-12 Myosin heavy chain-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016240 [exp] 3135 / 0 AT5G52280 122 / 8e-28 Myosin heavy chain-related protein (.1) Lus10017237 [exp] 745 / 0 AT1G63300 112 / 8e-25 Myosin heavy chain-related protein (.1) Lus10037927 [exp] 209 / 4e-54 AT1G22060 99 / 2e-20 unknown protein Lus10033461 [exp] 104 / 7e-22 AT1G22060 978 / 0.0 unknown protein Lus10020915 [exp] 103 / 1e-21 AT1G22060 985 / 0.0 unknown protein Lus10024517 [exp] 88 / 7e-17 AT5G41140 482 / 9e-154 Myosin heavy chain-related protein (.1.2) Lus10008012 [exp] 87 / 1e-16 AT5G41140 473 / 3e-150 Myosin heavy chain-related protein (.1.2) Lus10039218 [exp] 71 / 1e-11 AT5G52280 618 / 0.0 Myosin heavy chain-related protein (.1) Lus10001481 [exp] 67 / 2e-10 AT5G41140 476 / 1e-150 Myosin heavy chain-related protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G120400 [exp] 389 / 2e-111 AT1G22060 121 / 2e-27 unknown protein Potri.008G029800 [exp] 275 / 4e-74 AT1G22060 117 / 5e-26 unknown protein Potri.002G091700 [exp] 94 / 1e-18 AT1G22060 1546 / 0.0 unknown protein Potri.015G143800 [exp] 93 / 1e-18 AT5G52280 594 / 0.0 Myosin heavy chain-related protein (.1) Potri.003G124600 [exp] 92 / 3e-18 AT1G63300 810 / 0.0 Myosin heavy chain-related protein (.1) Potri.005G170066 [exp] 91 / 8e-18 AT1G22060 1031 / 0.0 unknown protein Potri.012G141200 [exp] 73 / 3e-12 AT5G52280 322 / 7e-95 Myosin heavy chain-related protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029303 pacid=23139944 polypeptide=Lus10029303 locus=Lus10029303.g ID=Lus10029303.BGIv1.0 annot-version=v1.0 ATGTTCAGGCTGCACAAGATCAAGTCGGACCGGTTGTCTCTAGGGGAGCGGATCGATTTCAAGATCTCCCATTTCAAAGCACTCCAGGTACCAAGAGGTT GGGACAAGCTGTATGTGACAGTGATATCGGTGGAGACAGGGAAGACTATAGCAAGGCTGAGCAAAGCAGTTGTGAAGAATGGTGGCAGCTGCCATTGGGA AGAGAGCTTTACCGAATCGGTTTGGGTCTCGCCCGACGAATCGTCCAAGGTGCTTGAAGATTGCATCTTCAAGTTCGTCCTTGCAATGGGATCTGCGAGA TCTGGTATTCTGGGAGAGGTGACTGTGAACATGTCGAGCTATATCAGCTCGAGTTCAGCAGTTTCGGTATCTTTTCCCTTGAAGAAATGCGATTATGCCA CTGTTCTGCAGGCCACGATTCAGTGCTTGACACCGATGGCGAATCTCAGGGATGCAGAGGGCAAAGAAACAAACCTTACTGATAAAAATGGCAAAGAAGA AGAATTACGAGACGATGAAGAAGGAACCAAGTCCGATCAGGAATCCGATACAGCTTCTCCGAAAGGCGGCCCTTCTTACGGAAGTAGTGACACTGGCTCT CCACCGGTTCAGGCCGGTCCTGAAACCAGGGAAGCTAGTTCCTCCGCAACGAATTCTCCTGGCAGCGAAGATTTGGAAGAAGCTGCAACAGCAGGCAGGC CTGTTCTGTTTCCTTCGAGACCAAGCCTGGTCCGAAGAGAAAGAAGAACCAGTTCCGGAAATGGAATTTCGAGTATGAACTATGTCGTGGACAGTCCTCG ATCCGAAAGATCCGTACCTATGAGGAGAATCCCGCGTCCAGGAAGCCGCTCAGGGGAAATCCATCAGGAATTCGGCATTAGCAGGCTGAGAAATTCAGCT TTACGAACCATGGATTCCTCCTCGACTTCGCAGACGTTCCTCGAAGCTGCGGAGGAAACGATTGGAGACCTCAGGACGCAGGCCAAGATGTGGGAGAGGA CTGCCAGAAAGCTGATGCTTGAGATGGACTACCTGAAGAAAGAAAACGTGGAGCTTTCCAGGAATCAAGGGAATCAGGATATGGAGTTTACGGAGGCTTG CGCCGAAAGGGATGGATTAAGGAAAGAAGTCGAGCAGCTGAAGCAGTTGTTAGCGAAGGCGAAGATGAAGCCGCCTCCTTTGGATAATCCGAGCGAAGGT ACGTGGCAAATGGTTAAGGAGTTGGAAAGGGAGATCAGTTTCCAGAAGGAAACAAGTGGAAACCTGACGATGCAGCTTAAGAGGAGTCAAGAGTCGAATG TTGAGCTCGTTACTGTTCTTCAGGATCTGGAAGAGACACTGGAGAAGCAGAAGATTGAAATCGAGAGTCTTTACGACATGGAGTCGAGATTCAGCAAGTT GGAAGATGCTATGGAAGCGAGCGCTGCAAGTAACAAGAACCTGAAGGTTCAGGTTCTGAAACTTCAGGAATCTGAAAAGGATTTGCTCAACAAAGTTCGA GAGCTGGAATCTGAAAAGGATTCCACCACTACAGACAGCGTCTCGATTCGAGAACGAGAAGTTGAGAGCATTAAAATGGAGATGCAAGGCAGAGTCAGAG AGCTTACCGAGGAGCTAGATGGAGTAAGAGCAGAGGTGAAAAGACTTGAGGCAGGCTTGGTTTTGAAACAGGTGGAGAATAAGGATCTTCAGAGATGTAG AACTGGAGCGGAGGCCAGGGTTTCGGTTCTGGAAAAGGAAAAGGAACATTTGGAGCTTGAGTTGGAAACAGTGACGAGAGAAAATGTAATTGCTTCAAAA TGCTTGAATGACCTGCAAAAGGATTTAGCAACAATAAGCAGCAACCTTGAAACTCATGCTTCCGTCAATAAGAACCTGGAAAGAAAATCGTTGGAGCTAG AACAGAACAATCAAGAAATAGAGCTTTGTTTATCAGAACTAAGACAGGAGAACGAAGATCTATCAACACACATTCTTGCGTTGGAAACTCGGTTAAGGTT CGAAGCAAGTGAACATAAATCCCGGATCTGTGAGCTTGAGAAGGAGCTAAGGAAGGCTGAAAGTGATTTCAACGTTTCAGCTCAAGAGATTGAAAGGCTG AAACTTGAGTTGGAAGTTAAAGTCAGTGAAATGTCAAAGCAGGTAGATGAAAGCAAGGCTGAGATTCAAAGTCTGGAAACCATTATGCAGGCTAATGAAG AGGAGGTCAGAGATCTTCAGAGGTGGAAAAGTGAGTTAGCAGCCAAACTTTCTGTTATTCAGGGCGAGAAGGACCAACTGGAGGAGAAGATGGGAGCCAT CATGACAGAAAACGATATCGCCACAAGACGCTCCAACGAGCTACAATCGGAGCTTACCACGACCAGAAGCAGCTTAGAAGAAAAGAGCTCTACTAATGAA GGCCTTGAGAGGAAGCATCTGGAACTGGAAAAACAGAAGAATGACTTGGGGAAACAATTGTCAGGAATCGAGCAAGATAATCAGGAGTTGTTGATGAACA TAACTGACCTGGAAACTCAGCTAAGGTCTGAAGCCAGTGACCACGAATCCCAACTGAATTCTGTAGAAGAGAGCTACAAAAAGCTGCTTATGCAGATTGA TAGCGACTGCAACGATTCACTAGCAAAGGTTGAGAAATTGAGAATGGAGTTAGAAGCTGAAGTTACAGAACTGAAAGCAGAACTCAGTGACAGGAAGGCA GAGATTGAGATACTTGATGCCTGTTTGCATGCCAAAGAAGAGGAGATCGGACAGCTTCAAAGGCACACAAGAGAATCAGAGGTCAAAATTTTCGATTTGA AGGAGGAAAAATGCCAGCTAGAGAACAACATGGAAACAGTCATGGAAGAAAATGACGTTGCAGTGAGACGCTTGAATGACTCTCAACAGGAAATAATTAT GCTCAGAAGCAGTGTTGAATCCCATGTTGCTTCAAACAATGCTCTCGAGACCAAATGCTCGGAGCTAGAAGGGAAGAAGCTAGAACTGGAGCTCCATTCT TCGGAGCTAAAGCAGGGAAATGAACAGCTCGCCACACTTTTGTCAGAATTGGAAGCTGAACTAAGATCCGAGAGAGATAAACTCGAGTCCCTAAAGCGTG TACTTGAAGAGAAGGAGGAGCAGCTAAAGGAAGTTGATAACAGATACAATATTTTGAGGCAAGAGTTGGAAAGTGCTAAAAAGGAGATGGAAGTTACAGT CTCTGAGCATGCTAAAGAACTTACTGAGAAAATGGCTGAGATAAAAGGACTGGAGTCTTTGCTACAGTCACAAAAAGAAGAAAATGCGAGGGTTCAGTAT TTGTTGCAGTCAAAAGAAGAAGAAAATAGGAGCCTTCAATCTCTACTGCAGTCAAAAGATGAAGAAATTGGGAGCCTTCAGTCTGTGTTGCAGTCGAAAG AAGAAGACATTGTGAACCTTCAGGTTTTGATGCAGTCAAAAGAAGAAGAAATTGTTATCCTTCAGGCTTTGCTGCAGTCCAAAGAAGAAGAAACTCGGAG CCTTCAGACTTCGCTGCAGTCAAAAGAAAACGAGACTGAGAACCTTCAGTCTTTGCTGCACTTAAAAGAAGAAGAAACAGGTAGCCTTCAGTTTCTGGTT CAGTCGAAAGAAGAACAAATTGGGAGCCTTCAGACTTTCCTGCAGTCAAAAGAAGAAGAAATTGACAGCCTTCAGACTTTGCTGCAGTCAAAACAAGAAG AAATTGGGGTCCTTCAGCCTTTGCTGGAGTTAAAAGAAGAAGAAATTGGTAACCTTCAGTCTCTGGTGCAGTCAAAAGAAGAAGAAATTGGGAACCTTCA GTCTTTGGTGCATTCAAAAGAAGAGGAAATTGTTAACCTTCAGTCTTCTCTGCAATCAAAAGAAGAAGAAATTGATACCCTTCAGTCATTGCTGCAGTCA AAGGAAGAAGTAGTGGTGAACCTTCAGTCTTTCTTGCAGTCAAAAGAAGAAGCAATTGTGAGGCTTCAGTCTTTGCTGCAGTCAAAAGAAGAAGAAACAG GAAACCTTCAGTCTTTGTTACAGACAAAAGAAGAAGAAATTGGGAACCTTCAGATGTGCAGCAGAGAATTAGAGTCTGAACTTGTTAACCTGGAACAGGA GAAGCATCAGCTCGAACACGACATGGAAACAGTCGTGAGAGAAAATGTTGAAGCCAGGAACCGGTTGAAAGACTTGTACAGTAGCATCGACTATCATGTT ACTGCCAAGGAAGTTCCTGAAAGTGATCATTCATCAGAGAAGGAGGAAAGTCAAGGTTTGTCCTCCTCCATATCTGACCTGGAAGCTAAAATGTTGCACC TCGGAAGAGAGAGGGAATCAACGGAGGAAGAAGTCAAGGACTCCAAGTCCGAGGCCAAGAGTTTGAAGGACGAGATTGTCAGATTGAGTGACGAAATTGA TACCGAAAGGATGAACATGAAGAATCTGCTGATGCAGATCAATAATGAATGCATTACAGCACATGAGGAAAATGAGTGCCTGAAAAATGAGATTCAGAAG TTACAAGCCACATATGAAAGCTTTAGAGAAGAGCATAATGCAATTCTGGTAAAGAATGAAGAGTTGGTAAGGGAAAACACTGATCTGGAAAGTCAACGCA ACCATTTGGAGGCAACATTGAAGAGTACTCAATTAACCCTTGATGAGTTCTCCAAGAGAATTATAAACTTGGAAGATGAAAATGAATGTCTGGAAGAGAA GAGTCACAGGTCACAAGCCACAACTGAAGACTTCATAGAAGAACATAATGCGTGTCTGGTGAAGAATGAAGAGTTGGCAATGATGAACACTGATCTAAAG ACAGAGCTGAAGAATGCTCAGTTAAGCCTTGATGAGTTCGCCAAGAGGGTTATGGGTTTTGAAGAGAAAATTTATTCACTTGAGCAAGGGAGTGCCACCA AGGTTAAGAATCTAGCTTCAAAAGTTGATCAATTGTGCAGAAAATTCGAGGAACAGGTAGAAAATCAGAAGGAAGCTAGACCGACTACTTCAGAAATGGA ATTCAGCTTTGAAGAGCTAGCTGCTTTCAAGATAAATCAAGAGAAGCTACAGTCTGAGAATAGAAGAATGACATACCGGTTCGAAGACTACAAGTCATCT GAAGCAAAATTGAGGACAACAATCAACGAACTCGAGTTAACGCTCACGGTTTCTGACTATGAGCACAACATTCTGAAAGAAGAAGCCATGAAGCTGAAGG CCCAGTTGCTGAAACTAGGACCAGTCCACGAACAAGTGTTGGCGTTGAAGACCGAACTGAATGCTGCCAAGTCAGATAAAAATAAGTTCAAATCTTCGTT GAATCTAGTCTCCACGGAATGTCAACATCTTGAGGCAGAGAAGAGCTCACTTATTGAAGAAATAGCTGTCCTCCATAAGTGTGTCCATCAACTAGAGGAA CATAAGAGACAAAGATTCGCCTTGGAAGATAAGCTGAAAAATATGGAGAGGGATCTGATGGCCAAAGAAGCATTGTGGCAACGTGACGAGCAAGTCAACG ATGAGCTCAACAAGATCAGGAAAGCCAATAAACAGCTCCATAAGATAATGGAGGAACTGGAGGATGAGAAAGATGATTATGCAGCAAAAGCCAGATCGCT CGAGGAAGAGTTGGTGATGATTCAGGAAGAACAGTTGAACTTCTCCAGCAGTAGCAACGTGGATGAAAACGGAGATGCTGGATCATTTGAGCAGCAACTT TCCGAGTCTAGGAATGCAAAACCCTCACTGAGAATGCACAGAAAAAGGAAGATAAAGATAAATTAG
AA sequence Show only first row Show all	>Lus10029303 pacid=23139944 polypeptide=Lus10029303 locus=Lus10029303.g ID=Lus10029303.BGIv1.0 annot-version=v1.0 MFRLHKIKSDRLSLGERIDFKISHFKALQVPRGWDKLYVTVISVETGKTIARLSKAVVKNGGSCHWEESFTESVWVSPDESSKVLEDCIFKFVLAMGSAR SGILGEVTVNMSSYISSSSAVSVSFPLKKCDYATVLQATIQCLTPMANLRDAEGKETNLTDKNGKEEELRDDEEGTKSDQESDTASPKGGPSYGSSDTGS PPVQAGPETREASSSATNSPGSEDLEEAATAGRPVLFPSRPSLVRRERRTSSGNGISSMNYVVDSPRSERSVPMRRIPRPGSRSGEIHQEFGISRLRNSA LRTMDSSSTSQTFLEAAEETIGDLRTQAKMWERTARKLMLEMDYLKKENVELSRNQGNQDMEFTEACAERDGLRKEVEQLKQLLAKAKMKPPPLDNPSEG TWQMVKELEREISFQKETSGNLTMQLKRSQESNVELVTVLQDLEETLEKQKIEIESLYDMESRFSKLEDAMEASAASNKNLKVQVLKLQESEKDLLNKVR ELESEKDSTTTDSVSIREREVESIKMEMQGRVRELTEELDGVRAEVKRLEAGLVLKQVENKDLQRCRTGAEARVSVLEKEKEHLELELETVTRENVIASK CLNDLQKDLATISSNLETHASVNKNLERKSLELEQNNQEIELCLSELRQENEDLSTHILALETRLRFEASEHKSRICELEKELRKAESDFNVSAQEIERL KLELEVKVSEMSKQVDESKAEIQSLETIMQANEEEVRDLQRWKSELAAKLSVIQGEKDQLEEKMGAIMTENDIATRRSNELQSELTTTRSSLEEKSSTNE GLERKHLELEKQKNDLGKQLSGIEQDNQELLMNITDLETQLRSEASDHESQLNSVEESYKKLLMQIDSDCNDSLAKVEKLRMELEAEVTELKAELSDRKA EIEILDACLHAKEEEIGQLQRHTRESEVKIFDLKEEKCQLENNMETVMEENDVAVRRLNDSQQEIIMLRSSVESHVASNNALETKCSELEGKKLELELHS SELKQGNEQLATLLSELEAELRSERDKLESLKRVLEEKEEQLKEVDNRYNILRQELESAKKEMEVTVSEHAKELTEKMAEIKGLESLLQSQKEENARVQY LLQSKEEENRSLQSLLQSKDEEIGSLQSVLQSKEEDIVNLQVLMQSKEEEIVILQALLQSKEEETRSLQTSLQSKENETENLQSLLHLKEEETGSLQFLV QSKEEQIGSLQTFLQSKEEEIDSLQTLLQSKQEEIGVLQPLLELKEEEIGNLQSLVQSKEEEIGNLQSLVHSKEEEIVNLQSSLQSKEEEIDTLQSLLQS KEEVVVNLQSFLQSKEEAIVRLQSLLQSKEEETGNLQSLLQTKEEEIGNLQMCSRELESELVNLEQEKHQLEHDMETVVRENVEARNRLKDLYSSIDYHV TAKEVPESDHSSEKEESQGLSSSISDLEAKMLHLGRERESTEEEVKDSKSEAKSLKDEIVRLSDEIDTERMNMKNLLMQINNECITAHEENECLKNEIQK LQATYESFREEHNAILVKNEELVRENTDLESQRNHLEATLKSTQLTLDEFSKRIINLEDENECLEEKSHRSQATTEDFIEEHNACLVKNEELAMMNTDLK TELKNAQLSLDEFAKRVMGFEEKIYSLEQGSATKVKNLASKVDQLCRKFEEQVENQKEARPTTSEMEFSFEELAAFKINQEKLQSENRRMTYRFEDYKSS EAKLRTTINELELTLTVSDYEHNILKEEAMKLKAQLLKLGPVHEQVLALKTELNAAKSDKNKFKSSLNLVSTECQHLEAEKSSLIEEIAVLHKCVHQLEE HKRQRFALEDKLKNMERDLMAKEALWQRDEQVNDELNKIRKANKQLHKIMEELEDEKDDYAAKARSLEEELVMIQEEQLNFSSSSNVDENGDAGSFEQQL SESRNAKPSLRMHRKRKIKIN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52280			Myosin heavy chain-related pro...		Lus10029303 [exp]	0	1
AT1G24530			Transducin/WD40 repeat-like su...		Lus10011402 [exp]	1.4	0.8758
					Lus10026124 [exp]	2.4	0.8277
AT5G07040			RING/U-box superfamily protein...		Lus10005389 [exp]	2.8	0.8352
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040923 [exp]	3.2	0.8549
AT5G62280			Protein of unknown function (D...		Lus10031122 [exp]	3.5	0.8378
AT4G28020			unknown protein		Lus10008905 [exp]	3.9	0.7784
AT1G13570			F-box/RNI-like superfamily pro...		Lus10006346 [exp]	4.6	0.8137
AT1G15170			MATE efflux family protein (.1...		Lus10018135 [exp]	5.5	0.8346
AT3G30280			HXXXD-type acyl-transferase fa...		Lus10029647 [exp]	5.7	0.7305
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007588 [exp]	7.7	0.7915

Compare expression of checked genes

Lus10029303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.