Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58060 577 / 0 Cation efflux family protein (.1) AT1G79520 358 / 1e-121 Cation efflux family protein (.1.2) AT1G16310 354 / 1e-119 Cation efflux family protein (.1) AT2G39450 327 / 9e-110 ATMTP11 Cation efflux family protein (.1) AT2G47830 55 / 5e-08 Cation efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016239 [exp] 820 / 0 AT3G58060 574 / 0.0 Cation efflux family protein (.1) Lus10009598 [exp] 365 / 5e-124 AT1G16310 518 / 0.0 Cation efflux family protein (.1) Lus10001768 [exp] 364 / 1e-122 AT1G16310 521 / 0.0 Cation efflux family protein (.1) Lus10040318 [exp] 361 / 1e-122 AT2G39450 587 / 0.0 Cation efflux family protein (.1) Lus10023439 [exp] 353 / 6e-120 AT2G39450 585 / 0.0 Cation efflux family protein (.1) Lus10016242 [exp] 143 / 5e-42 AT3G58060 119 / 1e-33 Cation efflux family protein (.1) Lus10029300 [exp] 103 / 7e-27 AT3G58060 61 / 3e-13 Cation efflux family protein (.1) Lus10000061 [exp] 96 / 9e-23 AT1G16310 165 / 6e-49 Cation efflux family protein (.1) Lus10016244 [exp] 74 / 9e-14 AT3G58050 851 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G010200 [exp] 598 / 0 AT3G58060 540 / 0.0 Cation efflux family protein (.1) Potri.001G010000 [exp] 586 / 0 AT3G58060 529 / 0.0 Cation efflux family protein (.1) Potri.003G215600 [exp] 576 / 0 AT3G58060 521 / 0.0 Cation efflux family protein (.1) Potri.001G010300 [exp] 566 / 0 AT3G58060 479 / 4e-169 Cation efflux family protein (.1) Potri.010G211300 [exp] 369 / 7e-126 AT2G39450 598 / 0.0 Cation efflux family protein (.1) Potri.008G049600 [exp] 367 / 4e-125 AT2G39450 595 / 0.0 Cation efflux family protein (.1) Potri.008G083600 [exp] 360 / 3e-122 AT1G16310 521 / 0.0 Cation efflux family protein (.1) Potri.010G172800 [exp] 358 / 1e-121 AT1G16310 585 / 0.0 Cation efflux family protein (.1) Potri.010G172700 [exp] 355 / 1e-120 AT1G16310 545 / 0.0 Cation efflux family protein (.1) Potri.010G172900 [exp] 353 / 3e-119 AT1G16310 572 / 0.0 Cation efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [flax] [poplar] Cation_efflux Cation efflux family
Representative CDS sequence Show only first row Show all	>Lus10029304 pacid=23139874 polypeptide=Lus10029304 locus=Lus10029304.g ID=Lus10029304.BGIv1.0 annot-version=v1.0 ATGGAAGGAGAAGGAGGTGGATTGGATCATGATGATACCAAGACTCCATTGCTGAAGCAGCAGTCTCGTCACTCCGTTAACAGCCTGAAGGGCAATTTCC TGTCGAATCTGCCGGAGAAAGTCCGTTCTGGGATCGACCCTGAATCTCCTTTCGACCTTGATCTCTCCAAGACAACTGGCCTGATTGAAGGTGAAAAGGA ATACTACGAGAGGCAATTTGCTACCTTGAAATCTTTCGAGGAAGTCGACTCTCTCGAGGAACCACAAGCCGTAGATGAAGAGCATGATATGCAGGAGCAA GCTCAGCATGAGCGAGCCATGAACATATCTAACTGGGCCAACGTGTTTCTACTAGCTTTGAAGATATATGCTACGGTGAAGAGTGGATCTCTAGCTATTG CTGCCTCAACACTGGATTCTTTACTGGATCTGATGGCTGGAGGGATCCTTTGGTTCACTCACCTTTCCATGAAGAGCATCAACATATACAAGTACCCTAT TGGAAAGCTGAGGGTCCAACCAGTCGGAATCATCATTTTCGCTGCTATCATGGCTACCCTCGGGTTCCAGGTTCTGGTGCAAGCTATACAAAAGCTTATC ACGGACGAGCCCTCCGAAAAGATGACATCAAACCAGTTGGTTTGGATGTACGCGATCATGCTGACGGCGACATTCGTCAAGCTCGCGTTATGGTTCTACT GTAGAAGCTCGGGAAACAAAATTGTTCGAGCTTATGCAAAGGACCACTACTTCGACGTGGTAACCAATGTAGTTGGTCTCGTTGCTGCTGACCTCGGTAA CAGATTCTACTGGTGGATCGATCCGGTTGGAGCAATAATCCTTGCAGTCTATACGATTACAAATTGGTCCGGCACCGTGCTAGAGAATGCAGTTTCACTA GTTGGACAGTCGGCTCCTCCAGAGTTCCATCAAAAGCTCACCTACCTTGTTCTCCGGCACCACCCACAAATCAAACGAGTGGACACCGTTCGTGCATATA CGTTCGGTGTACTCTTTTTCGTCGAGGTCGACATAGAGCTCCCAGAGGACTTGCCGCTGAAAGAAGCTCACGCAATTGGAGAGTCATTGCAAATAAAGAT CGAAGAGCTCCCCGAAGTGGAGAGGGCGTTTGTGCACCTAGATTACGAGTGCACTCACAAGCCGGAGCACACTGTCCTGAGCCGAATACCAGATGGTTTG GATTAA
AA sequence Show only first row Show all	>Lus10029304 pacid=23139874 polypeptide=Lus10029304 locus=Lus10029304.g ID=Lus10029304.BGIv1.0 annot-version=v1.0 MEGEGGGLDHDDTKTPLLKQQSRHSVNSLKGNFLSNLPEKVRSGIDPESPFDLDLSKTTGLIEGEKEYYERQFATLKSFEEVDSLEEPQAVDEEHDMQEQ AQHERAMNISNWANVFLLALKIYATVKSGSLAIAASTLDSLLDLMAGGILWFTHLSMKSINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLVQAIQKLI TDEPSEKMTSNQLVWMYAIMLTATFVKLALWFYCRSSGNKIVRAYAKDHYFDVVTNVVGLVAADLGNRFYWWIDPVGAIILAVYTITNWSGTVLENAVSL VGQSAPPEFHQKLTYLVLRHHPQIKRVDTVRAYTFGVLFFVEVDIELPEDLPLKEAHAIGESLQIKIEELPEVERAFVHLDYECTHKPEHTVLSRIPDGL D

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58060			Cation efflux family protein (...		Lus10029304 [exp]	0	1
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Lus10030539 [exp]	7.7	0.7284
AT1G68490			unknown protein		Lus10041444 [exp]	9.3	0.6584
AT3G58140			phenylalanyl-tRNA synthetase c...		Lus10018853 [exp]	11.7	0.7334
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028686 [exp]	12.2	0.7146
AT3G17090			Protein phosphatase 2C family ...		Lus10037779 [exp]	14.7	0.7120
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Lus10029525 [exp]	18.4	0.6873
AT2G22600			RNA-binding KH domain-containi...		Lus10002662 [exp]	25.7	0.6944
AT5G43460			HR-like lesion-inducing protei...		Lus10041152 [exp]	28.1	0.7192
AT2G04540			Beta-ketoacyl synthase (.1)		Lus10014622 [exp]	28.8	0.7193
AT4G34810			SAUR-like auxin-responsive pro...		Lus10042377 [exp]	29.5	0.6898

Compare expression of checked genes

Lus10029304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.