Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41945 194 / 2e-64 unknown protein AT5G18250 72 / 1e-16 unknown protein AT3G04040 71 / 5e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021080 [exp] 244 / 3e-81 AT2G41945 230 / 2e-75 unknown protein Lus10017230 [exp] 224 / 6e-75 AT2G41945 215 / 2e-71 unknown protein Lus10016236 [exp] 95 / 5e-23 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10020259 [exp] 78 / 8e-19 AT5G18250 174 / 3e-57 unknown protein Lus10002635 [exp] 66 / 7e-14 AT3G04040 170 / 3e-55 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G195200 [exp] 215 / 1e-72 AT2G41945 200 / 8e-67 unknown protein Potri.001G023000 [exp] 74 / 3e-17 AT5G18250 144 / 2e-45 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029305 pacid=23139851 polypeptide=Lus10029305 locus=Lus10029305.g ID=Lus10029305.BGIv1.0 annot-version=v1.0 ATGGGAACTCGGGACGTTTGCGAAGAGAAGTTACGCCGCGGAAATCTTCATGACGTTCCTGCGATCAAACCCGGACTCGGCTCACCTCGTTGCCCTCGCT GCCTCTCCTCCCTCCTCGATGCAGAGAACGGCGAATGGGCCATCACTTCTGTTCTTCACGACGCCACCGCCGTGGCTGGCTCCGGCATTGGTGCCATGCT TAGTGCAGTCCATGGTTTCAATACAGGCATCCCGTTCCTACAGAATCGTCTGAAGGGACCAAAGTGGCTTCCCTTGGTAGTTGGGTTTCCTCCACTGCTA ATGTACTCTGCTGCATGTGCTACATTCGGAGGTTATGTGCTTCCAGAATTCGCTCAACTTACGGTGACTTCCTACTATGCTGCATCAAGTGCCTCACATT ATGGGATTTCACTGTTCACACGAGAAATTGAGGAGGCCCATACTTCAAAGGTTGACCAAGAAAAGCACAAATGA
AA sequence Show only first row Show all	>Lus10029305 pacid=23139851 polypeptide=Lus10029305 locus=Lus10029305.g ID=Lus10029305.BGIv1.0 annot-version=v1.0 MGTRDVCEEKLRRGNLHDVPAIKPGLGSPRCPRCLSSLLDAENGEWAITSVLHDATAVAGSGIGAMLSAVHGFNTGIPFLQNRLKGPKWLPLVVGFPPLL MYSAACATFGGYVLPEFAQLTVTSYYAASSASHYGISLFTREIEEAHTSKVDQEKHK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41945			unknown protein		Lus10029305 [exp]	0	1
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010985 [exp]	37.3	0.6881
					Lus10017410 [exp]	42.0	0.6333
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10029814 [exp]	55.3	0.6950
AT2G33320			Calcium-dependent lipid-bindin...		Lus10003570 [exp]	60.7	0.6218
AT1G80100		AHP6	histidine phosphotransfer prot...		Lus10011487 [exp]	72.5	0.6685
AT4G25780			CAP (Cysteine-rich secretory p...		Lus10006981 [exp]	75.7	0.6655
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Lus10011660 [exp]	122.5	0.6506
AT1G49960			Xanthine/uracil permease famil...		Lus10006134 [exp]	146.4	0.6537
AT2G15730			P-loop containing nucleoside t...		Lus10042667 [exp]	158.1	0.6445
AT3G06778			Chaperone DnaJ-domain superfam...		Lus10037711 [exp]	187.1	0.6378

Compare expression of checked genes

Lus10029305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.