Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65870 207 / 2e-68 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G58170 196 / 5e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G49040 188 / 5e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT2G21100 185 / 8e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G55210 182 / 9e-59 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) AT5G42500 179 / 2e-57 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G22900 177 / 2e-56 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G13650 175 / 5e-56 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42510 174 / 1e-55 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G13662 162 / 5e-51 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017231 [exp] 223 / 1e-74 AT1G58170 191 / 2e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10026176 [exp] 211 / 7e-70 AT1G58170 207 / 1e-68 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10042488 [exp] 208 / 1e-68 AT1G58170 202 / 1e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10016237 [exp] 203 / 9e-68 AT1G58170 149 / 6e-47 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034476 [exp] 184 / 4e-59 AT2G21100 220 / 1e-73 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10021084 [exp] 181 / 4e-58 AT5G42500 164 / 2e-51 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025067 [exp] 180 / 1e-57 AT2G21100 214 / 3e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10039561 [exp] 176 / 6e-56 AT3G13650 157 / 5e-49 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10030483 [exp] 172 / 1e-54 AT1G65870 164 / 1e-51 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G061000 [exp] 263 / 2e-90 AT1G58170 214 / 2e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.006G195300 [exp] 256 / 1e-87 AT5G49040 202 / 2e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060700 [exp] 245 / 2e-83 AT1G65870 186 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060900 [exp] 233 / 1e-78 AT1G58170 197 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216400 [exp] 223 / 1e-74 AT1G58170 225 / 1e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216300 [exp] 221 / 6e-74 AT1G55210 221 / 5e-74 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.001G009100 [exp] 211 / 6e-70 AT1G58170 238 / 1e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216200 [exp] 208 / 7e-69 AT1G55210 239 / 2e-81 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.009G131000 [exp] 201 / 4e-66 AT2G21100 236 / 4e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060801 [exp] 188 / 2e-61 AT1G58170 164 / 5e-52 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10029306 pacid=23139948 polypeptide=Lus10029306 locus=Lus10029306.g ID=Lus10029306.BGIv1.0 annot-version=v1.0 ATGGCCAAATACTCTGTCTTCCTCCTCCTCCTCCTCCTCCTCCTCACCTCAGCCCTCTCCTCCGCCATCTCCGCTGCAACTGCAAAACCCCGCGGCGGCT TCTCCCGCATGCTCTCGCCGGCGACCTTCCGCCTGAAGAAGGAGAAGCTGAGCCACCTCCACTTCTACTTCCACGACATCGTCAGCGGGCCTAACCCAAC CGCAGTCCAGATAGCCCAGGCTCACTCCACCAACCTATCCGCCACGGGCTTCGGAATGACGGCCATGATCGACGACCCGCTGACCGCTGGGCCGGAGCGC ACTTCCAAGCTGGTGGGCCGGGCCCAGGGGATCTACGGCTCCGCCTCGCAGTCGGAAGTGGGCCTGCTGATGGCGCTTAATTTTGCGTTTGTGGAAGGGA AGTATAACGGGAGCACGCTGAGCGTGCTGGGGAGGAACGCCGTGATGTCGCCGGTGAGGGAGATACCGGTGATCGGCGGGAGTGGGGTTTTCCGGTTTGC TAGAGGGTATGCTAAGGCGAAGACTAGGGTTTATGATGTCAAGACCGGGGATGCTGTTGTTGAGTATAATGTCTACGTTTTCCATTATTGA
AA sequence Show only first row Show all	>Lus10029306 pacid=23139948 polypeptide=Lus10029306 locus=Lus10029306.g ID=Lus10029306.BGIv1.0 annot-version=v1.0 MAKYSVFLLLLLLLLTSALSSAISAATAKPRGGFSRMLSPATFRLKKEKLSHLHFYFHDIVSGPNPTAVQIAQAHSTNLSATGFGMTAMIDDPLTAGPER TSKLVGRAQGIYGSASQSEVGLLMALNFAFVEGKYNGSTLSVLGRNAVMSPVREIPVIGGSGVFRFARGYAKAKTRVYDVKTGDAVVEYNVYVFHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65870			Disease resistance-responsive ...		Lus10029306 [exp]	0	1
AT3G51990			Protein kinase superfamily pro...		Lus10015478 [exp]	6.0	0.8259
AT5G23100			Protein of unknown function, D...		Lus10038951 [exp]	8.9	0.8240
AT1G61500			S-locus lectin protein kinase ...		Lus10024081 [exp]	11.8	0.8413
AT4G37980		ELI3-1, ATCAD7	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10023268 [exp]	15.7	0.8685
					Lus10042813 [exp]	18.3	0.8581
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012011 [exp]	22.7	0.8606
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032347 [exp]	26.8	0.8588
AT1G23850			unknown protein		Lus10014532 [exp]	28.0	0.7850
AT3G22560			Acyl-CoA N-acyltransferases (N...		Lus10039343 [exp]	35.8	0.7648
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10014285 [exp]	38.3	0.8394

Compare expression of checked genes

Lus10029306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.