Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12020 1013 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G06670 972 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G21730 700 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G39050 498 / 2e-159 Kinesin motor family protein (.1) AT2G21380 494 / 3e-158 Kinesin motor family protein (.1) AT3G10180 219 / 2e-58 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G24170 205 / 3e-54 ATP binding microtubule motor family protein (.1) AT3G51150 202 / 4e-53 ATP binding microtubule motor family protein (.1.2) AT2G21300 199 / 8e-53 ATP binding microtubule motor family protein (.1.2) AT1G18370 196 / 3e-51 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016236 [exp] 1675 / 0 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018145 [exp] 751 / 0 AT1G21730 1033 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025688 [exp] 751 / 0 AT1G21730 1042 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017969 [exp] 503 / 3e-161 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10041958 [exp] 498 / 2e-160 AT4G39050 1202 / 0.0 Kinesin motor family protein (.1) Lus10017496 [exp] 427 / 4e-133 AT4G39050 1235 / 0.0 Kinesin motor family protein (.1) Lus10028790 [exp] 368 / 2e-110 AT4G39050 1242 / 0.0 Kinesin motor family protein (.1) Lus10012103 [exp] 223 / 2e-59 AT3G10180 1271 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10005181 [exp] 217 / 3e-58 AT3G43210 1189 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G060400 [exp] 1288 / 0 AT3G12020 1281 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G194900 [exp] 1263 / 0 AT3G12020 1278 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G081300 [exp] 795 / 0 AT1G21730 1063 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G122100 [exp] 503 / 4e-161 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.004G161100 [exp] 498 / 3e-159 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.006G040700 [exp] 217 / 1e-57 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G027600 [exp] 215 / 1e-57 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.007G014800 [exp] 211 / 3e-56 AT5G66310 868 / 0.0 ATP binding microtubule motor family protein (.1) Potri.005G116900 [exp] 208 / 3e-55 AT3G51150 668 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.006G136600 [exp] 208 / 3e-55 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10029307 pacid=23139912 polypeptide=Lus10029307 locus=Lus10029307.g ID=Lus10029307.BGIv1.0 annot-version=v1.0 ATGGCGTCGAGGAGTGGATCAAAATCGAAAAAGCTAGGCTCCAGTAAAGCTGCCAATTCGACGCCGTCTTCTTCCACCACGACTTCTTCCTCCAAGCACT TCGTCGAGACCTCAATCGACGGCCATAGCTCCCCTGCGTCTTCCTCTGTTCGGAGTAAGCCGCCTCAGTATTTCTACTCCGAGTCTCTGCCTGTCGATGG AGGGAGATCCAAGGAGAATGTAACTGTCACAGTCCGTTTTCGTCCTCTCAGTCCGAGGGAAATTCGTCAAGGAGAGGAGGTAGCTTGGTACGCGGATGGT GAAACTATCGTCCGGAGTGAACATAATCCGACGATTGCCTATCCTTATGATCGCGTTTTCGGCCCTACAACTACAACAAGGCACGTTTACGATGTTGCGG CTCAACATGTTGTTAGCGGCACCATGGACGGTGTCAATGGCACCATTTTTGCCTACGGTGTCACAAGCAGTGGAAAGACACACACAATGCATGTTGTCAA TGATTTGTTGAATCCAGCTGGACAAAATTTAAGAATCAGAGAAGATGCTCAGGGAACTTTTGTCGAAGGAATAAAGGAAGAAGTTGTGTTATCCCCTGCA CATGCGCTTTCCCTCATTGCAGCTGGAGAAGAGCACAGACATGTTGGTTCTACGAACTTTAATCTTCTCAGCAGCAGAAGTCATACAATTTTTACACTGA CAATAGAGAGTAGTCCATGCGGAGAAAACTGTGTAGGAGAATCTGTGAATCTCTCCCAATTGGTAATTGCCAATCCTTCTACTAGTTTCGAGAGCCAAAG CTTACTGCTTGAACTTCCGACGGTGGCTAACCTCATCGATCTGGCAGGTTCCGAGAGTTCAAAGGCTGAAACTACTGGGATGAGGCGTAAAGAAGGAGCC TACATAAATAAGAGCCTTCTAACTCTTGGGACAGTTATATCAAAATTGACAGAAGGGAGGGCAAGTCACATACCGTATAGGGACTCAAAGCTAACAAGGC TCCTTCAATCTTCATTGAGTGGTCTTGGACGTGTATCTCTGATTTGCACCGTAACACCCGCATCGAGCAGCTCAGAAGAGACGCATAATACTTTGAAATT TGCTCACCGGGCAAAACACATGGAGATACAAGCAGCACAGAACAAGATTATTGACGAGAAATCACTCATCAAGAAGTACCAAAACGAGATACGTTGTTTG AAAGAAGAGTTAGAACAACTGAAGAAGGGTATTGTAACAGTCCCCCAATTACAAAACATCAGCGAAGACGACATCGTGCTTTTGAAACAGAAGCTGGAAG ATGGTCAAGTCAAGCTGCAGTCCAAATCCGAAGAAGATGAAGAAGCTAAAGACGCCTTAATGAGCAGGATACAGCGGTTGACTAAGTTGATTTTGGTTTC TAGTAAAACTTCGCAATCACCTAGGATTTCTCAACGGCCTATACCGAGAAGGAGACATTCATTTGGAGAAGAAGAGCTTGCATATTTACCCTACAAAAGG AGGGACTTGATACTGGATGAAGAGAACGTTGACTTCTATGTTTCCCTTGAAGGGAATCCGGAAGCTACAGATGACACCCTTAAAGAGAAGAAAACCAAGA AGAACGGACTACTGAATTGGTTGAAATTACGGAAAAAAGATGGTCTAGGAACAAGCACAAGTGACAAATCGAGCGGAGCAAAATCGAATAGCACCCCTTC AACACCTCAAGCAGAAAATAGCCATTCCCATTCAGAATTGCGACATGGACATTCATTGCTCATGGAAAGCTCACCATCAGCCGAGCTTCATTCTGACGTT AGGCACGATACAGATGCCCCGGAGGACAATTTCCTTGGCCAGGAAACTCCGTCGACTAGCATAAAGACAAGCGATCAGATTGAGCTTCTAAGAGAGCATC AGAATATTTTGTCCGGAGAGGTGGCACTCCATTCAAGTGCTTTGAAGCGGTTTTCGGAGGAAGCCTCGCGGAATCCCCAGAACGAAAATATTCAAATCGA GATCATGAAGTTGAGCAATGAAATCACGGCGAAGAACGAGCAAATCTCTTTACTCGAAAAGAAAATTTCTGACTCGCTGATGGTCTCTTCACACAGCAAG ATGGATGATTTCGAAGTTTCTCAAAAGATTGCTGAGCTCACAGAACAATTGAATGAGAAATCATTCGACCTCGAGGTTAAAGCTGCAGATAATCGCGTAA TTGAAGAACAGCTCAGCCAAAAGGTAACTGAATGCGAGCAGCAGCAGGAAACAATTGCATCGTTACAGCAGCAGCTTTCGGACGCGCTAGAGCAAAAATC TACAAGCGCTCTCGATAGTCACTCGCAACGGTTCCTCGAAATGAAAGGCATCCATGTCCAAGGTCGTATGGAGAAGGAAATGCCATTGCCAGAGCCTAAG GATAGAAATGAGGAACTGCTATTACAACAACAGGCCTCCGAGATCGAAGAACTGAAGCGAGAGCTCGCTCAGTCAACAGCCTCGAAGGAAGATCTAGAAA ACCGAAACCAAAAACTGGCTGAGGACAGCACTTACGCCAAGGGACTAGCTTCAGCTGCTGCAGTCGAGCTCAAAGCCTTATCGGAAGAAGTCGCAAAGCT GATGAACCAAAACGAGAGGCTGTCAGCCGAGCTGACATCACTAAAGAGCTCGTCACCAACGAATCGCAGAAACAGCACCGGCGGTGGCAGTGGTACTACA TTTCGAAACGGGAGGAGGGAGAGTCCGGTCGGGAAGCGGCTCGACCAACAACAATCCGGGCCAGCCGCGGAACATCTCAAGAGAGAGCTTGCGGTGAGCC GGGACAGAGAGCACCAGTACGAAGCTGTATTGGCTGAGAAGGACCAGAGAGAGGCCGAGCTGCAAAGGAAGGTAGAGGAATCGAAACAGAGGGAAGCGTA TTTGGAGAACGAGCTGGCGAACATGTGGGTGCTCGTCGCGAAATTGAAGAAGACGCAATCCGGTAGTGGGGATACTACCGAGGCTTCTACTCGAATCGAT GATGGTTTCGGAATTTGA
AA sequence Show only first row Show all	>Lus10029307 pacid=23139912 polypeptide=Lus10029307 locus=Lus10029307.g ID=Lus10029307.BGIv1.0 annot-version=v1.0 MASRSGSKSKKLGSSKAANSTPSSSTTTSSSKHFVETSIDGHSSPASSSVRSKPPQYFYSESLPVDGGRSKENVTVTVRFRPLSPREIRQGEEVAWYADG ETIVRSEHNPTIAYPYDRVFGPTTTTRHVYDVAAQHVVSGTMDGVNGTIFAYGVTSSGKTHTMHVVNDLLNPAGQNLRIREDAQGTFVEGIKEEVVLSPA HALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENCVGESVNLSQLVIANPSTSFESQSLLLELPTVANLIDLAGSESSKAETTGMRRKEGA YINKSLLTLGTVISKLTEGRASHIPYRDSKLTRLLQSSLSGLGRVSLICTVTPASSSSEETHNTLKFAHRAKHMEIQAAQNKIIDEKSLIKKYQNEIRCL KEELEQLKKGIVTVPQLQNISEDDIVLLKQKLEDGQVKLQSKSEEDEEAKDALMSRIQRLTKLILVSSKTSQSPRISQRPIPRRRHSFGEEELAYLPYKR RDLILDEENVDFYVSLEGNPEATDDTLKEKKTKKNGLLNWLKLRKKDGLGTSTSDKSSGAKSNSTPSTPQAENSHSHSELRHGHSLLMESSPSAELHSDV RHDTDAPEDNFLGQETPSTSIKTSDQIELLREHQNILSGEVALHSSALKRFSEEASRNPQNENIQIEIMKLSNEITAKNEQISLLEKKISDSLMVSSHSK MDDFEVSQKIAELTEQLNEKSFDLEVKAADNRVIEEQLSQKVTECEQQQETIASLQQQLSDALEQKSTSALDSHSQRFLEMKGIHVQGRMEKEMPLPEPK DRNEELLLQQQASEIEELKRELAQSTASKEDLENRNQKLAEDSTYAKGLASAAAVELKALSEEVAKLMNQNERLSAELTSLKSSSPTNRRNSTGGGSGTT FRNGRRESPVGKRLDQQQSGPAAEHLKRELAVSRDREHQYEAVLAEKDQREAELQRKVEESKQREAYLENELANMWVLVAKLKKTQSGSGDTTEASTRID DGFGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12020			P-loop containing nucleoside t...		Lus10029307 [exp]	0	1
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10000715 [exp]	3.5	0.7715
AT5G56890			Protein kinase superfamily pro...		Lus10027635 [exp]	5.0	0.7804
AT5G24430			Calcium-dependent protein kina...		Lus10023234 [exp]	9.3	0.6486
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Lus10001857 [exp]	15.7	0.7289
AT2G41830			Uncharacterized protein (.1)		Lus10042372 [exp]	16.0	0.7649
AT3G10540			3-phosphoinositide-dependent p...		Lus10017448 [exp]	21.4	0.6390
AT1G71360			Galactose-binding protein (.1)		Lus10003532 [exp]	23.5	0.6565
					Lus10001135 [exp]	24.4	0.7138
AT4G21450			PapD-like superfamily protein ...		Lus10039757 [exp]	29.1	0.7437
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Lus10037457 [exp]	29.1	0.7113

Compare expression of checked genes

Lus10029307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.