Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06660 280 / 2e-97 Protein of unknown function DUF106, transmembrane (.1) AT3G12030 280 / 4e-97 Protein of unknown function DUF106, transmembrane (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016235 [exp] 350 / 8e-125 AT5G06660 308 / 3e-108 Protein of unknown function DUF106, transmembrane (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G060300 [exp] 269 / 7e-93 AT5G06660 264 / 5e-91 Protein of unknown function DUF106, transmembrane (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0376 [flax] [poplar] Oxa1 PF01956 [flax] [poplar] EMC3_TMCO1 Integral membrane protein EMC3/TMCO1-like
Representative CDS sequence Show only first row Show all	>Lus10029308 pacid=23139984 polypeptide=Lus10029308 locus=Lus10029308.g ID=Lus10029308.BGIv1.0 annot-version=v1.0 ATGGCGACTCCTCAATTCCTTTCCTCCTTCAAGTACGGCGATAGCCTGACCGTTATCGGAATCTCCCTGTGCACGGCCGTCGTCTGCGAGGCCATCTCTT GGATCCTGATCTACCGCACTAGCTCCTACAAGTCCCTCAAGTCTTCCATCGACAAGGCGTCGAAGAAGCTCGAGACGATGAAGACCGACACCGCTGCAAA GATCATCACAAAGAAGTCCAAGTCCAAGAAGATCAACCGTGTCGAGACCTCCCTCAAGGAGTCCAGCCGCGACCTCTCGCTTTTCAAGTTCAAGTCCGGA GCTGTCGTCGCCTTGGTCCTGTTCATCGTCTTCGGGCTCCTGAACTCGCTGTTCGAAGGCAAAGTCATCGCCAAGCTTCCTTTCCACCCGATCGCGCTAG TGAAGAAGATGAGCCACAGAGGATTGCAAGGCGACGATCCGACTGATTGTTCCATGGCGTTTTTGTACTTCCTGTGCTCGATGAGCATCAGGACGAATCT GCAGAAGTTTCTAGGATTCTCGCCGCCGCGTGGAGCTGCTGCTGCCGGATTGTTCCCCATGCCTGATCCGAAGACGAATTGA
AA sequence Show only first row Show all	>Lus10029308 pacid=23139984 polypeptide=Lus10029308 locus=Lus10029308.g ID=Lus10029308.BGIv1.0 annot-version=v1.0 MATPQFLSSFKYGDSLTVIGISLCTAVVCEAISWILIYRTSSYKSLKSSIDKASKKLETMKTDTAAKIITKKSKSKKINRVETSLKESSRDLSLFKFKSG AVVALVLFIVFGLLNSLFEGKVIAKLPFHPIALVKKMSHRGLQGDDPTDCSMAFLYFLCSMSIRTNLQKFLGFSPPRGAAAAGLFPMPDPKTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06660			Protein of unknown function DU...		Lus10029308 [exp]	0	1
AT5G13890			Family of unknown function (DU...		Lus10012588 [exp]	1.4	0.9560
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10011539 [exp]	1.7	0.9636
AT5G47030			ATPase, F1 complex, delta/epsi...		Lus10001082 [exp]	2.8	0.9556
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10037958 [exp]	4.9	0.9259
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10011412 [exp]	5.5	0.9360
AT2G36460			Aldolase superfamily protein (...		Lus10023870 [exp]	5.7	0.9558
					Lus10023559 [exp]	5.9	0.9497
AT2G27260			Late embryogenesis abundant (L...		Lus10034173 [exp]	6.2	0.9287
AT5G41670			6-phosphogluconate dehydrogena...		Lus10032341 [exp]	6.3	0.9283
AT4G35630		PSAT	phosphoserine aminotransferase...		Lus10005333 [exp]	6.9	0.9354

Compare expression of checked genes

Lus10029308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.