Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06600 1909 / 0 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G11910 1884 / 0 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT3G58250 139 / 9e-36 TRAF-like family protein (.1) AT3G58270 132 / 2e-33 Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.1), Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.2) AT3G58340 123 / 2e-30 TRAF-like family protein (.1) AT3G58360 122 / 2e-30 TRAF-like family protein (.1) AT3G58210 122 / 6e-30 TRAF-like family protein (.1) AT3G27040 112 / 1e-26 Meprin and TRAF (MATH) homology domain-containing protein (.1) AT3G58260 107 / 4e-25 TRAF-like family protein (.1) AT3G58410 107 / 5e-25 TRAF-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008949 [exp] 1840 / 0 AT5G06600 1904 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10043456 [exp] 1838 / 0 AT5G06600 1925 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034130 [exp] 1796 / 0 AT3G11910 1888 / 0.0 ubiquitin-specific protease 13 (.1.2) Lus10028871 [exp] 837 / 0 AT5G06600 1351 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034129 [exp] 167 / 9e-47 AT5G06600 164 / 2e-46 ubiquitin-specific protease 12 (.1.2.3) Lus10025569 [exp] 146 / 3e-37 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10019772 [exp] 150 / 1e-36 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10027030 [exp] 120 / 4e-29 AT5G06600 120 / 8e-30 ubiquitin-specific protease 12 (.1.2.3) Lus10013378 [exp] 125 / 6e-29 AT3G43590 256 / 1e-74 zinc knuckle (CCHC-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G198300 [exp] 1974 / 0 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.016G064100 [exp] 1955 / 0 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G012600 [exp] 1906 / 0 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.010G245100 [exp] 1899 / 0 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.003G103200 [exp] 107 / 6e-25 AT3G17380 251 / 2e-82 TRAF-like family protein (.1) Potri.001G130700 [exp] 107 / 6e-25 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.005G179500 [exp] 112 / 1e-24 AT3G49600 1245 / 0.0 ubiquitin-specific protease 26 (.1) Potri.010G075000 [exp] 110 / 5e-24 AT1G04300 855 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.008G163300 [exp] 108 / 9e-24 AT1G04300 846 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.002G081600 [exp] 108 / 2e-23 AT3G49600 1251 / 0.0 ubiquitin-specific protease 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase CL0389 [flax] [poplar] TRAF PF00917 [flax] [poplar] MATH MATH domain CL0072 [flax] [poplar] Ubiquitin PF12436 [flax] [poplar] USP7_ICP0_bdg ICP0-binding domain of Ubiquitin-specific protease 7
Representative CDS sequence Show only first row Show all	>Lus10029309 pacid=23139780 polypeptide=Lus10029309 locus=Lus10029309.g ID=Lus10029309.BGIv1.0 annot-version=v1.0 ATGACTATGATGACTCCACCTCCCCCGTTGGATCAAGAAGATGAGGAGATGCTGGTACCGAATTCAGATGTTGTGGTCGAAGGTCCTCAGCCGATGGAAG TGGCACAAGTGGAGGCTGCTAGTACGGTGGAGAATCAGCAGCCGGAGGAACCTCCGTCTATTAAGTTCACGTGGACGATTGAGAATTTCACTAGGTTGAA CACTAAGAAGCACTATTCTGATACGTTTGTCGTCGGCGGTTACAAATGGCGTGTTCTCATCTTTCCTAAGGGGAACAATGTCGATCACTTGTCGATGTAT TTGGATGTTGCGGATTCGCAAACATTGCCCTACGGCTGGAGCCGGTATGCACAGTTCAGTTTAGGTGTGGTGAATCAAATCCACAATAAGTTCACAATCA GGAAAGACACTCAGCATCAGTTCAATGCAAGGGAGAGTGATTGGGGTTTCACATCGTTTATGGCCCTCAGTGATCTTTATGATCCTAGTAAGGGTTACCT TGTGAATGACACCATATTCATTGAAGCTGAAGTGATTGTTCGGAAGGTTCTTGATTACTGGTCTTATGACTCCAAGAAAGAGACGGGGTATGTTGGTCTA AAGAATCAAGGAGCAACATGCTACATGAATTCCCTCCTGCAAACACTGTACCATATCCCTTACTTTAGACAGGCTGTATACCACATGCCGACAACTGAGA ATGACAATCCTACTGGAAGCATTCCTTTGGCTCTGCAGAGCCTGTTTTATAAGCTTCAATATAATGACACCAGTGTGGCAACTAAGGAATTGACGAAGTC GTTTGGATGGGATACATACGACTCATTCATGCAGCATGATGTGCAAGAACTCAATAGAGTATTATGTGAAAAGTTGGAAGATAAGATGAAGGGAACTGTT GTTGAGGGCACAATCCAGAAGCTATTTGAAGGTCACCATATGAACTATATTGAGTGCATCAACGTGGACTACAAATCTACTAGAAAGGAGTCATTCTATG ATCTGCAGCTTGATGTAAAAGGTTGTAAGGATGTTTATGCATCTTTTGACAAGTATGTGGAAGTTGAGCGACTTGAGGGTGATAACAAATACCATGCTGA AGGACATGGTCTACAGGATGCCAAGAAGGGTGTCTTATTTATTGATTTCCCACCTGTTCTTCAACTGCAACTTAAGCGCTTTGAATATGACTTTATGCGG GACACGATGGTAAAGATCAACGATCGGTATGAATTTCCTCTTCAACTTGATCTGGACAGAGAGGACAGGAAGTATCTGTCACCACAGTCTGACAGGAGTG TTCGCAATCTTTATACACTTCATAGTGTGTTGGTCCATAGCGGAGGTGTGCATGGAGGACACTATTATGCTTTTATCAGGCCTACTTTATCAGATCAATG GTACAAATTTGATGATGAACGGGTGACAAAAGAAGACATGAAGAGAGCACTAGAAGAACAATATGGTGGCGAAGAAGAGCTGCCACAGACCAATCCAGGA TTCAACAACACGCCATTTAAATTCACAAAATACTCGAATGCATATATGCTTGTGTATATACGTGACAGTGACAAAGAGAAGATCATTTGCAATGTTGATG AACAAGACATTGCAGAACACTTGAGAATAAGATTGAAGAAAGAACAAGAAGAAAAAGAAGACAAAAAACGATATAAGGCACAAGCTCACCTCTATACCAT CATAAAGGTTGCAAGAGACGAGGATCTTAAAGAGCAGATTGGAAAAGAGTTATACTTTGACCTTGTGGACCACGATAAAGTTCGTAATTTCCGTGTACAG AAACAGACACCGTTCAATAACTTTAAGGAAGAAGTTGCCAAAGAATTTGGTATACCAGTTCAATGTCAGCGGTTCTGGATATGGGCAAAGCGTCAAAACC ATACATACCGTCCCAATCGACCATTGCTGCCCCAGGAAGAGGCTCAATCAGTTGGACAACTCAGGGAGCTGTCAAATAAGACACACAATGCCGAATTGAA GTTGTTTCTGGAAGTAGAAATGGGGATGGACTTACGACCAATTCCACCACCTGACAAAACGAAGGAAGACATTCTTCTCTTCTGCAAGTTTTATGACCCC ATGAAAGCAGAATTAAGGTATGTTGGTAGGCTCTTGGTGAAGCTTACGAGTAAACCAAGCGAAATTGTGCCAAAGCTCAATCAAATGGCTGGTTTTTCTC CTGATGAAGATATTGACCTTTATGAGGAAATAAAATTCGAGCCTAATGTAATGTGTGAACACATAGACAAGAGGACAACATTCCGATCATGTCAGCTTGA AGATGGAGATATAATCTGTTTCCAAAAAAATCGTGTTTATAATGAAGATGAGTGTCGATATCCAGCTGTGCCTTCATTTTTGGAATACGTGCACAATCGG CAGGTAGTTCACTTCCGATCTCTTGAGAAACCAAAAGAGGATGATTTCTGCTTGGAATTGTCAAAGTTACATACCTATGATGATGTTGTGGAGCGAGTGG CTCGTCAAATTGGCTCAGATGACCCATCAAAAATCCGAATCACATCTCACAATTGCTACTCTCAGCAGCCTAAACCTCAACCAATCAGATACAGAGGGGT TGACCACTTGACAGATATGTTGATCCACTACAATCAGACGTCCGATATCTTGTACTACGAAGTTTTGGACATTCCTCTCCCTGAATTGCAAGGTTTAAAA AATCTCAAGGTTGCTTTCCATCATGCTACCAAAGAAGAGGTGGTTGTGCATAACATCAGATTGCCTAAACAGAGTACTGTTGGTGATGTGATTAATGAAC TTAAAACCAAGGTTGAGCTGTCTAACCCAAATGCTGAACTTCGGTTGATTGAAGTTTTCTACCACAAGATATACAAAACTTTTCCGCCCAGTGAAAAAAT CGAGAATATCAATGATCAATACTGGACATTGCGTGCAGAAGAGATCCCAGAGGATGAGAAAGATATTGGTCCGCTGGATCGTGCTCATTTGCGACACCTT CAGGAAGGACAAGTACAAAACTTTGGGGAACCATTTTTCTTGGTCATCCATGACGGAGAAACATTAGCCGACATCAAAGTTCGGATACAAAAGAAATTGC AAGTTGCTGACGAGGAGTTCGCCAAGTGGAAATTTGCTTTCCTGTCGTTGGGTCGGCCAGAGTATTTGCAGGATTCCGATGTTGTAACCACTAAATTTCA GAGAAGGGATGTGTATGGTGCTTGGGAGCAGTACCTTGGATTGGAACACCAAGATACCGCTCCGAAGAGGCCTCATGCAGCAAATCAGAATCGTCACACA TTCGAGAAGCCGGTTAAGATATACAATTAG
AA sequence Show only first row Show all	>Lus10029309 pacid=23139780 polypeptide=Lus10029309 locus=Lus10029309.g ID=Lus10029309.BGIv1.0 annot-version=v1.0 MTMMTPPPPLDQEDEEMLVPNSDVVVEGPQPMEVAQVEAASTVENQQPEEPPSIKFTWTIENFTRLNTKKHYSDTFVVGGYKWRVLIFPKGNNVDHLSMY LDVADSQTLPYGWSRYAQFSLGVVNQIHNKFTIRKDTQHQFNARESDWGFTSFMALSDLYDPSKGYLVNDTIFIEAEVIVRKVLDYWSYDSKKETGYVGL KNQGATCYMNSLLQTLYHIPYFRQAVYHMPTTENDNPTGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTV VEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCKDVYASFDKYVEVERLEGDNKYHAEGHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMR DTMVKINDRYEFPLQLDLDREDRKYLSPQSDRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDMKRALEEQYGGEEELPQTNPG FNNTPFKFTKYSNAYMLVYIRDSDKEKIICNVDEQDIAEHLRIRLKKEQEEKEDKKRYKAQAHLYTIIKVARDEDLKEQIGKELYFDLVDHDKVRNFRVQ KQTPFNNFKEEVAKEFGIPVQCQRFWIWAKRQNHTYRPNRPLLPQEEAQSVGQLRELSNKTHNAELKLFLEVEMGMDLRPIPPPDKTKEDILLFCKFYDP MKAELRYVGRLLVKLTSKPSEIVPKLNQMAGFSPDEDIDLYEEIKFEPNVMCEHIDKRTTFRSCQLEDGDIICFQKNRVYNEDECRYPAVPSFLEYVHNR QVVHFRSLEKPKEDDFCLELSKLHTYDDVVERVARQIGSDDPSKIRITSHNCYSQQPKPQPIRYRGVDHLTDMLIHYNQTSDILYYEVLDIPLPELQGLK NLKVAFHHATKEEVVVHNIRLPKQSTVGDVINELKTKVELSNPNAELRLIEVFYHKIYKTFPPSEKIENINDQYWTLRAEEIPEDEKDIGPLDRAHLRHL QEGQVQNFGEPFFLVIHDGETLADIKVRIQKKLQVADEEFAKWKFAFLSLGRPEYLQDSDVVTTKFQRRDVYGAWEQYLGLEHQDTAPKRPHAANQNRHT FEKPVKIYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10029309 [exp]	0	1
AT2G19950		GC1	golgin candidate 1 (.1.2)		Lus10034941 [exp]	2.8	0.9019
AT4G00800		SETH5	transducin family protein / WD...		Lus10002679 [exp]	3.9	0.9331
AT3G28430			unknown protein		Lus10011235 [exp]	4.7	0.8973
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10005068 [exp]	10.0	0.9193
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10027906 [exp]	10.1	0.8719
AT4G24100			Protein kinase superfamily pro...		Lus10000878 [exp]	13.6	0.8846
AT3G14010		CID4	CTC-interacting domain 4 (.1.2...		Lus10037656 [exp]	17.1	0.8953
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10032589 [exp]	18.2	0.9108
AT1G48090			calcium-dependent lipid-bindin...		Lus10017107 [exp]	18.8	0.8996
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10000941 [exp]	19.2	0.8621

Compare expression of checked genes

Lus10029309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.