Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43590 137 / 2e-36 zinc knuckle (CCHC-type) family protein (.1) AT5G36240 69 / 3e-13 zinc knuckle (CCHC-type) family protein (.1) AT3G43490 52 / 1e-07 Zinc knuckle (CCHC-type) family protein (.1) AT5G52380 41 / 0.0006 VASCULAR-RELATED NAC-DOMAIN 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016232 [exp] 480 / 2e-172 AT3G43590 139 / 6e-37 zinc knuckle (CCHC-type) family protein (.1) Lus10013378 [exp] 140 / 3e-37 AT3G43590 256 / 1e-74 zinc knuckle (CCHC-type) family protein (.1) Lus10008437 [exp] 138 / 1e-36 AT3G43590 264 / 4e-80 zinc knuckle (CCHC-type) family protein (.1) Lus10027475 [exp] 48 / 4e-06 AT5G52380 261 / 1e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1) Lus10039230 [exp] 47 / 5e-06 AT5G52380 261 / 2e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G193500 [exp] 156 / 6e-43 AT3G43590 299 / 3e-93 zinc knuckle (CCHC-type) family protein (.1) Potri.009G155500 [exp] 141 / 1e-37 AT3G43590 286 / 9e-89 zinc knuckle (CCHC-type) family protein (.1) Potri.016G063800 [exp] 128 / 3e-35 AT3G43590 141 / 2e-38 zinc knuckle (CCHC-type) family protein (.1) Potri.015G144600 [exp] 42 / 0.0002 AT5G52380 261 / 2e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Lus10029311 pacid=23139826 polypeptide=Lus10029311 locus=Lus10029311.g ID=Lus10029311.BGIv1.0 annot-version=v1.0 ATGGAAAATCTCGGCTGTGAGATCATCGAAGAAAACGGAAGCATGAACGGAGCCGATCAGGCAAGTTGCAGCAATGGTGGAAACGAAGCTCCGATTAGAT CTGCAGAAGATGATGATGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGTTGAGACTGAAGAAGCTAGGCGATCTGATTGGGCCGGAGAATCTGAAAGC ATTACTGGATGCAGAAGGAGGCGGGAGAAGAAATGCTGCTTATCACAGTAGTCCTCCGAACTGGAGGAGGAGGAGGAGAAGGAGAAGAAGGAAGGCTAAG GAATCGAATTCTGATAAATCACATGATCAGATCCAAGTTCAGCAGCAGCCTGATCACTTGCCTCATGAAACTGCAAAAGAAGAGAAGCAACAGGAAAAGT CAAGGAACGGAGTAAATGGAACTGGCGAAGACAATGTGGTGCCAAGGAAGCTACTTCGCAGACCAAGGTATTTCGATCCTCCAATGGACGATGGATTGGA GGAACTCTGTCCCCTTTGTGGCCAGGATGGACACGTAGCTAGGCGTTGTGTGTTGCAGAAGAACCAGAAGAAACCATGCTTCCTTTGTGGAAGTTCCGAG CATGCCTGGAAATATTGTGACAAGAGCTTGTGCAAACGAGAAGGCTACCACTCCAAGGAGAAAGACGAGTTATCCTCTGTGATCTGCTTGAAATGCAGGG AGACCGGGCACGACATGCTGTCATGTAAGAGTGATTATGCACCTGATGATCTCAAGGGAATAGAATGCTACGTGTGCAAGAAGGATGGTCATTTGTGCTG TAGTGAGTTTCCAGACAACAATGGCCTTCTGCTGGAGGTTACGTGTTACAGTTGTGGCGAATTAGGCCACTCGGGTTCTGTAAGTCATCATGCACTATAA
AA sequence Show only first row Show all	>Lus10029311 pacid=23139826 polypeptide=Lus10029311 locus=Lus10029311.g ID=Lus10029311.BGIv1.0 annot-version=v1.0 MENLGCEIIEENGSMNGADQASCSNGGNEAPIRSAEDDDEEEEEEEEEEELRLKKLGDLIGPENLKALLDAEGGGRRNAAYHSSPPNWRRRRRRRRRKAK ESNSDKSHDQIQVQQQPDHLPHETAKEEKQQEKSRNGVNGTGEDNVVPRKLLRRPRYFDPPMDDGLEELCPLCGQDGHVARRCVLQKNQKKPCFLCGSSE HAWKYCDKSLCKREGYHSKEKDELSSVICLKCRETGHDMLSCKSDYAPDDLKGIECYVCKKDGHLCCSEFPDNNGLLLEVTCYSCGELGHSGSVSHHAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10029311 [exp]	0	1
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10042688 [exp]	16.2	0.8627
AT5G62580			ARM repeat superfamily protein...		Lus10036647 [exp]	18.9	0.8370
AT1G30300			Metallo-hydrolase/oxidoreducta...		Lus10038519 [exp]	23.7	0.8149
AT4G19350		EMB3006	embryo defective 3006 (.1)		Lus10033307 [exp]	28.6	0.8261
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10011157 [exp]	30.0	0.7999
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10010957 [exp]	41.8	0.8112
AT3G20790			NAD(P)-binding Rossmann-fold s...		Lus10031242 [exp]	43.7	0.7638
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10038973 [exp]	51.0	0.8099
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10029643 [exp]	56.4	0.8026
AT4G28550			Ypt/Rab-GAP domain of gyp1p su...		Lus10024920 [exp]	74.5	0.7897

Compare expression of checked genes

Lus10029311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.