Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13660 135 / 2e-41 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G58170 127 / 9e-38 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G65870 125 / 5e-37 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G55210 124 / 2e-36 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) AT3G13650 122 / 1e-35 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G49040 122 / 2e-35 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42510 115 / 4e-33 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42500 112 / 1e-31 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT2G21110 110 / 5e-31 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G58090 112 / 1e-30 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016231 [exp] 241 / 3e-82 AT1G65870 149 / 8e-46 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10000376 [exp] 193 / 2e-64 AT5G42510 87 / 1e-22 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10018340 [exp] 167 / 2e-53 AT1G58170 129 / 3e-38 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10026176 [exp] 135 / 1e-40 AT1G58170 207 / 1e-68 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10029306 [exp] 135 / 2e-40 AT1G65870 208 / 5e-69 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10042488 [exp] 132 / 2e-39 AT1G58170 202 / 1e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10030483 [exp] 122 / 3e-35 AT1G65870 164 / 1e-51 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10016237 [exp] 118 / 1e-34 AT1G58170 149 / 6e-47 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034482 [exp] 117 / 1e-32 AT2G21100 182 / 8e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G061000 [exp] 141 / 6e-43 AT1G58170 214 / 2e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216400 [exp] 138 / 1e-41 AT1G58170 225 / 1e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216200 [exp] 138 / 1e-41 AT1G55210 239 / 2e-81 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.003G216300 [exp] 138 / 1e-41 AT1G55210 221 / 5e-74 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.001G009100 [exp] 134 / 3e-40 AT1G58170 238 / 1e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060900 [exp] 130 / 8e-39 AT1G58170 197 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.006G195300 [exp] 127 / 1e-37 AT5G49040 202 / 2e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060801 [exp] 126 / 2e-37 AT1G58170 164 / 5e-52 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.009G131000 [exp] 123 / 5e-36 AT2G21100 236 / 4e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G023800 [exp] 119 / 3e-34 AT3G13650 171 / 2e-54 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10029312 pacid=23139959 polypeptide=Lus10029312 locus=Lus10029312.g ID=Lus10029312.BGIv1.0 annot-version=v1.0 ATGTGTTTCGATACTCATACAATACTCAAATTTCGATTCAAATTCAACTCAGTGTATGTTTTGATACTGGATCTGTCATCGACCAACACCACCTCCCCCA ATGTCACCGACGTCCTCTCCATCCGCCCTGCCTTGCCCAACTCCCCTGTTGGCTTCGGGGCCATAAGCGTCTTCGACCACCCCCTCACCGCTGGGCCCAT CCCTGGCTCGTCCTTGCTGGGCAGAGCTCAGGGCTCCTACGCGTCTGCTTCTCAGCATACGTTCGGGATTATGATGGCGATGAACTTGGTGTTTGTGGGC AGTAAGTTCAACGGAAGCAGCCTCACCGTGATGGGAAGGAATGAAGTGCCGTTGAAGGTTAGAGAGTTGCCGGTGGTCGGCGGGACAGGAGTTTTCCGGC TGGCTAGGGGCTATGTTCTTATGAATACGTACTTCTTTGACCCTACAGCTGGGCTTGCCTTCGTTGAGTATAATATCTACGCTTTGCATTATTGGTAA
AA sequence Show only first row Show all	>Lus10029312 pacid=23139959 polypeptide=Lus10029312 locus=Lus10029312.g ID=Lus10029312.BGIv1.0 annot-version=v1.0 MCFDTHTILKFRFKFNSVYVLILDLSSTNTTSPNVTDVLSIRPALPNSPVGFGAISVFDHPLTAGPIPGSSLLGRAQGSYASASQHTFGIMMAMNLVFVG SKFNGSSLTVMGRNEVPLKVRELPVVGGTGVFRLARGYVLMNTYFFDPTAGLAFVEYNIYALHYW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13660			Disease resistance-responsive ...		Lus10029312 [exp]	0	1
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10032140 [exp]	29.2	0.7404
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Lus10038767 [exp]	56.0	0.7205
AT5G56700			FBD / Leucine Rich Repeat doma...		Lus10017238 [exp]	56.1	0.7104
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10002101 [exp]	79.1	0.6593
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10032597 [exp]	111.7	0.6561
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10037390 [exp]	112.2	0.6951

Compare expression of checked genes

Lus10029312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.