Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20710 127 / 2e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G21705 125 / 1e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 114 / 1e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 108 / 8e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 107 / 4e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09450 100 / 3e-23 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 100 / 1e-22 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G60770 99 / 1e-22 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28020 97 / 1e-21 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15480 88 / 1e-18 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000247 [exp] 367 / 2e-128 AT2G20710 92 / 3e-22 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10016229 [exp] 333 / 5e-112 AT2G20710 269 / 7e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005600 [exp] 257 / 9e-86 AT2G20710 91 / 2e-22 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005599 [exp] 130 / 7e-37 AT2G20710 88 / 8e-22 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018588 [exp] 127 / 2e-32 AT2G20710 303 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005855 [exp] 122 / 3e-30 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021053 [exp] 120 / 6e-30 AT1G02370 494 / 3e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001213 [exp] 120 / 1e-29 AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003590 [exp] 117 / 7e-29 AT4G21705 434 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G063400 [exp] 163 / 3e-45 AT2G20710 349 / 3e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G133000 [exp] 160 / 1e-44 AT2G20710 310 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G063300 [exp] 155 / 2e-42 AT2G20710 345 / 1e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132700 [exp] 154 / 5e-42 AT2G20710 387 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.011G120900 [exp] 149 / 2e-40 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G132500 [exp] 144 / 1e-38 AT2G20710 388 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.011G051700 [exp] 130 / 2e-35 AT2G20710 151 / 1e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G050300 [exp] 125 / 2e-31 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G139400 [exp] 124 / 4e-31 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G194400 [exp] 123 / 7e-31 AT1G02370 466 / 2e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10029313 pacid=23139783 polypeptide=Lus10029313 locus=Lus10029313.g ID=Lus10029313.BGIv1.0 annot-version=v1.0 ATGAGTCTCTCTCGATTCCTCCTCAGACTCGCTTCCACCGTCTCTCCGTTCTCCGCCGGCGGCCGTTTCGGTTCACACTTCCATTCAAATGTTCCTTACA GCTCCGCCGCATCAGCGGCAGCTAGGCCCTCTTCGAACGGGAACTTCACCAGTCCAACCAACGAATCCAGAAATGAGCTTTACCGGCGAATTTCGCCGAT CGGGGATCCCAAGGTCTCCATTGTTCCGATTCTCGATCGATGGATTGAAGAAGGAAAGTCCGTCGACAAGCACCAGCTCGTTTCATATATCAAAGAGCTC CGCTACTTCGGTCGTCACTATCACGCCCTTGAGATCTCCAAGTGGATGACAGACAAAAGGTACTTGGAACTAACTTCACGAGATGCTGCAATAAGGCTGG ACTTGATAGCTAAGGTTCAAGGGCTAAAACCAGCAGCCAACTACTTCGTAACTCTCCCTCAGCAGCTTAAAGGGGTCAATACTTACGGCTCACTTCTCAA CTGCTACTGTCGCGTCCAGTCTGTGGAGAAGGCAGAGGCACTAAACAAAAAGAAAAAAGATATCAAAGCATACTATTACCTCCTCACAAGCTACGCAGCC ATGGGGAAGAAAGATGAAGTCTTTGAAGTTTGGGAACGTCTCAAGAAGAGCGGGAAGAAGGTTCTCAACAAAGGGTACATGGACTTGATATCTTCCATCA CGAAGCTGGGCGATTTCGAGGCTGCTGAGAAGATACTCGACAAGTGGGAGTCTCGGAAGAGCCCTGGTTACGATGTCCGCATCCCTCACGTCCTCGTCAG CGCCTACATGAAAGTTGGCCGTTTGGAAGAAGCCGGGGCCGTCGTGGAGAGGATGAGATCGAAAGGCGTCCAGCCACACGCGAACTCGTGGCTTTCGTTG GCGGTAGGGTATCTCGAGCATCGTAAGGATGTGTTGAAGGCGGTGGAGGCGATGAAGAGAGGCGTAACGGTGTCGGAGTCAGGTTGGAAACCCGACCCGA GAGGGTTGGCCGAGTGTCTGCAGCAGTTGAAAGATGCTGGGGGAGATCGTTTGGAGGAAGCGCGAGAGCTTGTGCAATTGCTGATGGAGCAGAATGTTGT TCCTTTAGCTGTTGGAAAGAAATGGTTGGTCGATGGTTCATCTGATCGGGTTGAAGAATCGGCTGAGTGA
AA sequence Show only first row Show all	>Lus10029313 pacid=23139783 polypeptide=Lus10029313 locus=Lus10029313.g ID=Lus10029313.BGIv1.0 annot-version=v1.0 MSLSRFLLRLASTVSPFSAGGRFGSHFHSNVPYSSAASAAARPSSNGNFTSPTNESRNELYRRISPIGDPKVSIVPILDRWIEEGKSVDKHQLVSYIKEL RYFGRHYHALEISKWMTDKRYLELTSRDAAIRLDLIAKVQGLKPAANYFVTLPQQLKGVNTYGSLLNCYCRVQSVEKAEALNKKKKDIKAYYYLLTSYAA MGKKDEVFEVWERLKKSGKKVLNKGYMDLISSITKLGDFEAAEKILDKWESRKSPGYDVRIPHVLVSAYMKVGRLEEAGAVVERMRSKGVQPHANSWLSL AVGYLEHRKDVLKAVEAMKRGVTVSESGWKPDPRGLAECLQQLKDAGGDRLEEARELVQLLMEQNVVPLAVGKKWLVDGSSDRVEESAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10029313 [exp]	0	1

Compare expression of checked genes

Lus10029313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.