Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53810 686 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 674 / 0 RLK receptor lectin kinase (.1) AT4G02420 634 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 612 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 605 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 581 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 575 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45430 534 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G43700 530 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G59700 527 / 8e-180 LECRK1, ATHLECRK LECTIN-RECEPTOR KINASE 1, lectin-receptor kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003224 [exp] 1010 / 0 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10008597 [exp] 1008 / 0 AT3G53810 771 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 978 / 0 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10016507 [exp] 597 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 596 / 0 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001564 [exp] 593 / 0 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004980 [exp] 590 / 0 AT3G53810 640 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 588 / 0 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040276 [exp] 579 / 0 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G088680 [exp] 791 / 0 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088600 [exp] 787 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 773 / 0 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 766 / 0 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088632 [exp] 758 / 0 AT2G37710 770 / 0.0 receptor lectin kinase (.1) Potri.006G088648 [exp] 729 / 0 AT2G37710 710 / 0.0 receptor lectin kinase (.1) Potri.006G088801 [exp] 691 / 0 AT3G53810 662 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G244000 [exp] 630 / 0 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036300 [exp] 613 / 0 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035400 [exp] 613 / 0 AT3G53810 629 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10029315 pacid=23139790 polypeptide=Lus10029315 locus=Lus10029315.g ID=Lus10029315.BGIv1.0 annot-version=v1.0 ATGGACATGTTCCCGAAACGACTCGCCGTCGTCCTACTAATAACATCTGTACTAGTATCATCATCATCCTCAAACGACGACGTCGGTTTCACATACAACC GCTTCCCGGCGAAGAACCTTGTACTCGACGGCACAGCAGAGTACACCTCAGACAACCTCCTCCGGCTCACCAACGACACATTCCAGGGACAAGGCCACGC CTTTTATCCCGACTCGGTAACGTTCAAAAATAACAATCCAAACGGTACCGTTTCGTCCTTCTCCACTTCCTTTGTCGTCGTAATTGTACCACAGTACTCG ATCCTGGGAGGCCACGGGATCGCCTTCGTGATCTCCCCCGCCAGAGGCCTCCCCGGTTCGCTTCCGAGCCAATACATGGGCTTGTTCAACAATTCCAACG TCGGGAATGTCACCAACCATGTATTCGCGGTCGAGCTGGACACGATTTCCAGTATCGAGTTTGGAGACATTGATAATAATCACGTCGGGATTGATATCAA CGGACTGGATTCGAAATCGGTAGCTCCAGCTGGATACTATGATGATTCTGATGGTGGCAAGCTTGTGAATTTGACTCTTATTTCTGGTGAGCCGATTCAG GTGTGGGTTGACTATGACGGCAGAAGGAAGAGAATTAACGTCACTTTAGCTCCCGTTAAACATAACGGAAAACCAAAGAATCCGTTAATTTCATTTCCAC AGGATCTGTCAGGAGTTTTGCAGGATAAGATGTTCATCGGCTTCTCGTCGTCTACCGGGGCAGCCCTGACGCGTCATTATGTATTGGGTTGGAGCTTTAA GATGAACGGACAGGCTGAAGATTTAACCATCTCTCCACTTCCCAACCTTCCGAGGTTCAGAGAACCAAACGAAAGTTCGAAGATGGAAATTCCTGCGATT TCGGTTGGGATTCCTGTGATTTCCGTCACACTGGCTCTGGTGGTGGTTTCAGGAGTTGTTTGGTTCGTCAGGAGGCGGAGGAAATTTGCGGAAGTGTTGG AAGATTGGGAGGTGGATTACGGGCCTCACAGGTTCAAATTCAAGGATTTGTACGTTGCCACGAAAGGATTTCGGTCGAAGGAGGAATTAGGGAGAGGCGG ATTTGGAACCGTTTACAAGGGAGTTTTGCGGAAGACGAAGAACGAGATAGCTGTGAAGAGGGTGTCTCATGATTCTAGGCAAGGGATGAGGGAATTCGTG GCGGAGATAGTTAGCATCGGCCGACTTCGTCACCGGAACTTGGTGAGTCTGTTGGGTTATTGTCGGAGGAAAGGGGAGTTACTTTTGGTGTACGATTTCA TGCCGAATAGTAGTTTGGACAAGTATCTTTACTATCAAAATAGGTTAGTTATGAATTGGTGCCTAAGGTTCAAAATTATAAAGGGTGTGGCTTCAGGGTT GTTCTACCTACACGGGGAATGGGAACAAGTCGTGATTCATAGAGATGTGAAGGCAAGCAATGTTATGATAGATAGCGAATGGAACGGCAGATTGGGCGAT TTCGGCCTAGCGAGGTTATATGATCACGGGTCGGATCCTCGAACAACATATGTCGCTGGCACTCCAGGGTACCTCGCACCTGAACAATGCCGAACTGGGA AGGCCACGACGAGTAGCGATGCTTACGCTTTTGGGGCATTTTTGCTAGAGGTGGCATGCGGGAGGAGGCCAATCGACCAAGAGAAGCCGGCCGGTCAGGT GATTTTGGTGGATTGGGTGTTTTCCTGTTGGCTTAGCGGTGACATTTTAGAAGCTATGGATCCGAATTTGGGAGAAGAGTTTGTCGCTGAGGAAGTTGAG TTGGTTTTGAAGCTCGGGTTGTTGTGCTCTCATTCTGACCCTGAAGCTCGACCGAGTATGCGACAGGTTCATCAAATATTGAACGGCGAATTACCTTTGC CCGATATGCCATCTATGGGAATTGCCATTTCCTCCACCGTCGGGCTTAACTTTGCCCGTAGCGAGCGACTTGTGGAATTGATTTCGTCTTCACGTTCCTT TTCGGAGTCGTCATTCAATCATTTTTCTTCTGCCGAAGAATCACTCGTATACGGTGGTCGTTGA
AA sequence Show only first row Show all	>Lus10029315 pacid=23139790 polypeptide=Lus10029315 locus=Lus10029315.g ID=Lus10029315.BGIv1.0 annot-version=v1.0 MDMFPKRLAVVLLITSVLVSSSSSNDDVGFTYNRFPAKNLVLDGTAEYTSDNLLRLTNDTFQGQGHAFYPDSVTFKNNNPNGTVSSFSTSFVVVIVPQYS ILGGHGIAFVISPARGLPGSLPSQYMGLFNNSNVGNVTNHVFAVELDTISSIEFGDIDNNHVGIDINGLDSKSVAPAGYYDDSDGGKLVNLTLISGEPIQ VWVDYDGRRKRINVTLAPVKHNGKPKNPLISFPQDLSGVLQDKMFIGFSSSTGAALTRHYVLGWSFKMNGQAEDLTISPLPNLPRFREPNESSKMEIPAI SVGIPVISVTLALVVVSGVVWFVRRRRKFAEVLEDWEVDYGPHRFKFKDLYVATKGFRSKEELGRGGFGTVYKGVLRKTKNEIAVKRVSHDSRQGMREFV AEIVSIGRLRHRNLVSLLGYCRRKGELLLVYDFMPNSSLDKYLYYQNRLVMNWCLRFKIIKGVASGLFYLHGEWEQVVIHRDVKASNVMIDSEWNGRLGD FGLARLYDHGSDPRTTYVAGTPGYLAPEQCRTGKATTSSDAYAFGAFLLEVACGRRPIDQEKPAGQVILVDWVFSCWLSGDILEAMDPNLGEEFVAEEVE LVLKLGLLCSHSDPEARPSMRQVHQILNGELPLPDMPSMGIAISSTVGLNFARSERLVELISSSRSFSESSFNHFSSAEESLVYGGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53810			Concanavalin A-like lectin pro...		Lus10029315 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Lus10039767 [exp]	2.6	0.8602
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033741 [exp]	6.9	0.8395
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Lus10024644 [exp]	8.4	0.8573
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10031604 [exp]	9.7	0.8377
AT5G25390	AP2_ERF	SHN3, SHN2	shine3, Integrase-type DNA-bin...		Lus10002912 [exp]	10.0	0.8384
AT2G27660			Cysteine/Histidine-rich C1 dom...		Lus10021061 [exp]	11.2	0.8306
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10006146 [exp]	12.7	0.8180
AT1G73300		SCPL2	serine carboxypeptidase-like 2...		Lus10012718 [exp]	15.9	0.8093
AT5G47860			Protein of unknown function (D...		Lus10009920 [exp]	15.9	0.7384
AT1G11340			S-locus lectin protein kinase ...		Lus10006745 [exp]	16.5	0.7980

Compare expression of checked genes

Lus10029315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.