Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44840 60 / 1e-12 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT5G47220 43 / 2e-06 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT4G17500 42 / 5e-06 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT2G22200 37 / 0.0002 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G22190 37 / 0.0002 AP2_ERF RAP2.4 related to AP2 4, Integrase-type DNA-binding superfamily protein (.1) AT1G36060 37 / 0.0003 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G33710 36 / 0.0005 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT2G20880 36 / 0.0008 AP2_ERF AtERF53 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016210 [exp] 76 / 6e-19 AT2G44840 154 / 7e-47 ethylene-responsive element binding factor 13 (.1) Lus10016225 [exp] 74 / 5e-18 AT2G44840 154 / 4e-47 ethylene-responsive element binding factor 13 (.1) Lus10016209 [exp] 73 / 9e-18 AT2G44840 148 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10029334 [exp] 73 / 9e-18 AT2G44840 152 / 1e-46 ethylene-responsive element binding factor 13 (.1) Lus10016211 [exp] 73 / 2e-17 AT2G44840 158 / 2e-48 ethylene-responsive element binding factor 13 (.1) Lus10029333 [exp] 71 / 8e-17 AT2G44840 147 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10016224 [exp] 70 / 2e-16 AT2G44840 143 / 1e-42 ethylene-responsive element binding factor 13 (.1) Lus10016212 [exp] 68 / 2e-15 AT2G44840 146 / 1e-43 ethylene-responsive element binding factor 13 (.1) Lus10029331 [exp] 66 / 6e-15 AT2G44840 147 / 4e-44 ethylene-responsive element binding factor 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G046700 [exp] 68 / 1e-15 AT2G44840 168 / 3e-52 ethylene-responsive element binding factor 13 (.1) Potri.014G047000 [exp] 59 / 3e-12 AT2G44840 160 / 2e-49 ethylene-responsive element binding factor 13 (.1) Potri.014G046600 [exp] 58 / 7e-12 AT2G44840 196 / 3e-63 ethylene-responsive element binding factor 13 (.1) Potri.014G046800 [exp] 51 / 6e-10 AT2G44840 130 / 7e-39 ethylene-responsive element binding factor 13 (.1) Potri.001G079900 [exp] 52 / 1e-09 AT4G17500 186 / 2e-58 ethylene responsive element binding factor 1 (.1) Potri.003G150700 [exp] 51 / 3e-09 AT4G17500 190 / 9e-60 ethylene responsive element binding factor 1 (.1) Potri.014G046900 [exp] 51 / 3e-09 AT2G44840 164 / 2e-50 ethylene-responsive element binding factor 13 (.1) Potri.003G081200 [exp] 45 / 3e-07 AT4G17500 211 / 1e-67 ethylene responsive element binding factor 1 (.1) Potri.001G154100 [exp] 44 / 7e-07 AT4G17500 221 / 2e-71 ethylene responsive element binding factor 1 (.1) Potri.019G102200 [exp] 39 / 9e-05 AT2G20880 195 / 2e-58 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029316 pacid=23139892 polypeptide=Lus10029316 locus=Lus10029316.g ID=Lus10029316.BGIv1.0 annot-version=v1.0 ATGTTGAGAAGAGTGGCTTGGGGATATTTCGCTGCAGCTTTGGCTTACGACAGAGATGCTTTCCAAATGAGGGAAGCCAAAGCTAAATTCAATTTCCCGC ATCTAGTGGGGTCTACTGATTACGAGCCTGTTAGAGTTATTAACAAAAAAGAGTGGTTCCCCGAAGCCATCGTCCTCCGGGGACTCGTTGTCGGGATCGG AAAGTGA
AA sequence Show only first row Show all	>Lus10029316 pacid=23139892 polypeptide=Lus10029316 locus=Lus10029316.g ID=Lus10029316.BGIv1.0 annot-version=v1.0 MLRRVAWGYFAAALAYDRDAFQMREAKAKFNFPHLVGSTDYEPVRVINKKEWFPEAIVLRGLVVGIGK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029316 [exp]	0	1
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10006917 [exp]	1.0	0.9982
AT2G29490		GST19, ATGSTU1	GLUTATHIONE S-TRANSFERASE 19, ...		Lus10007896 [exp]	5.6	0.9190
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10015066 [exp]	6.2	0.9736
					Lus10043052 [exp]	6.6	0.8806
					Lus10007508 [exp]	7.7	0.9695
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10034502 [exp]	8.1	0.9132
AT1G04670			unknown protein		Lus10004041 [exp]	8.9	0.9695
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	10.0	0.9695
AT3G53690			RING/U-box superfamily protein...		Lus10042610 [exp]	11.0	0.9695
					Lus10006918 [exp]	11.8	0.9695

Compare expression of checked genes

Lus10029316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.