Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11945 400 / 1e-138 PDS2, ATHST PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) AT2G18950 138 / 5e-37 ATHPT, VTE2, TPT1, HPT1 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) AT3G51820 59 / 2e-09 PDE325, ATG4, G4, CHLG PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016221 [exp] 604 / 0 AT3G11945 538 / 0.0 PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) Lus10025472 [exp] 132 / 2e-34 AT2G18950 504 / 7e-179 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Lus10006961 [exp] 130 / 1e-33 AT2G18950 519 / 0.0 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Lus10027815 [exp] 59 / 3e-09 AT3G51820 604 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Lus10002850 [exp] 50 / 2e-06 AT3G51820 518 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Lus10003379 [exp] 47 / 3e-05 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G197600 [exp] 432 / 6e-151 AT3G11945 560 / 0.0 PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) Potri.018G090700 [exp] 134 / 2e-35 AT2G18950 529 / 0.0 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Potri.018G022000 [exp] 118 / 1e-29 AT2G18950 369 / 2e-125 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Potri.006G166100 [exp] 109 / 2e-26 AT2G18950 379 / 2e-130 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Potri.006G102100 [exp] 54 / 6e-08 AT3G51820 547 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Potri.016G119400 [exp] 52 / 2e-07 AT3G51820 541 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF01040 [flax] [poplar] UbiA UbiA prenyltransferase family
Representative CDS sequence Show only first row Show all	>Lus10029321 pacid=23139973 polypeptide=Lus10029321 locus=Lus10029321.g ID=Lus10029321.BGIv1.0 annot-version=v1.0 ATGGAGCTCTCTTGCTCTTCGAGAATTTCAGCTACAGCCCTTCCTTCGACCTCTTCTTATCGTCTTCAGTCTAAGTTATCCGCCAAGCCCAGAAATTTCC CTCGCTTGCTCCTCCCAAGCTCCAAGCTTTTCCTTCCAGCAAACCTTTGCTCTCGCACAAATTGCTCCAAGCCGCAGCCGGTTAACCGAGCTTACTGGCG CAATTCCATCTGGGCATGCAGTCAAGTTGGAGCTGCTGGATCTGATCCTATAGTGACAAACAAGTTTTCGGATTTCAAAGACGCATGTTGGAGATTTCTC AGGCCTCATACCATACGTGGAACAGTATTAGGATCGACTGCTTTGGTGGCGAGAGCATTGATTGGAAACCCGGAGCTTATCAAATGGTCTCTCGTGTTGA AGGCATTCTCCGGTCTTGTCGCTTTACTCTGTGGGAATGGTTACATAGTTGGCATCAATCAAATCTATGACATTGGAATTGACAAGGTTAACAAACCTTA TTTGCCTATAGCTGCAGGGGATCTTTCGGTTCCGACTGCGTGGTTGTTGGTGACACTTTTTGCAGTCACTGGTGTTCTCATCGTTGGACTAAACTTCGGT CCATTCATCACCTCACTTTACTGCTTTGGTCTTTTCCTCGGCACTATCTATTCCGTTCCCCCCTTTAGAATGAAGAGATTTGCAGTTGCTGCATTTCTTA TAATTGCAACGGTAATATTGATTGTCAGCATTGATGATAAGGCTTTCCCATCTAATTGCAACCTAAGGAAATGCGATTCTGCTGCAGGTACGAGTTACCC TGTGGCATTTATTACATCCTTTGTGACACTTTTTGCTCTGGTCATTGCCATAACAAAGGATTTGCCAGATGTAGAAGGAGATCGAAAATTTAACATATCT ACTTTGGCTACTAAACTCGGTGTCAGAAATATTGCATTTCTTGGTTCCGGACTCTTACTGGTAAACTACATCAGTGCTGTGTTAGCAGCTGTTTACTTCC CTCAGACATGGCTGGTGGAACAGAGGAATTTTACAAAGGTAAGCATGACCCTCTCAGCTTTTCTTAGCAATCCTCTCAGTGGCACTTTCGGAGCCTCATG GCTTTTTTACATGTGCAGGAAGCTATCTCGGAGTTCTACCGCTTCATTTGGAACCTGTTCTATGCAGAATACATGA
AA sequence Show only first row Show all	>Lus10029321 pacid=23139973 polypeptide=Lus10029321 locus=Lus10029321.g ID=Lus10029321.BGIv1.0 annot-version=v1.0 MELSCSSRISATALPSTSSYRLQSKLSAKPRNFPRLLLPSSKLFLPANLCSRTNCSKPQPVNRAYWRNSIWACSQVGAAGSDPIVTNKFSDFKDACWRFL RPHTIRGTVLGSTALVARALIGNPELIKWSLVLKAFSGLVALLCGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVPTAWLLVTLFAVTGVLIVGLNFG PFITSLYCFGLFLGTIYSVPPFRMKRFAVAAFLIIATVILIVSIDDKAFPSNCNLRKCDSAAGTSYPVAFITSFVTLFALVIAITKDLPDVEGDRKFNIS TLATKLGVRNIAFLGSGLLLVNYISAVLAAVYFPQTWLVEQRNFTKVSMTLSAFLSNPLSGTFGASWLFYMCRKLSRSSTASFGTCSMQNT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11945		PDS2, ATHST	PHYTOENE DESATURATION 2, homog...		Lus10029321 [exp]	0	1
AT3G58830			haloacid dehalogenase (HAD) su...		Lus10020774 [exp]	3.3	0.8290
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10015320 [exp]	5.3	0.7857
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Lus10018116 [exp]	5.8	0.8234
AT1G70280			NHL domain-containing protein ...		Lus10030637 [exp]	6.3	0.7954
AT4G30020			PA-domain containing subtilase...		Lus10001310 [exp]	9.0	0.8082
AT5G23130			Peptidoglycan-binding LysM dom...		Lus10013432 [exp]	9.8	0.7852
AT1G78270		ATUGT85A4	UDP-glucosyl transferase 85A4 ...		Lus10036969 [exp]	11.6	0.7810
AT1G25570			Di-glucose binding protein wit...		Lus10034275 [exp]	12.7	0.7516
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Lus10033422 [exp]	20.8	0.7637
AT3G01810			unknown protein		Lus10041590 [exp]	21.0	0.7941

Compare expression of checked genes

Lus10029321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.