Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39570 105 / 5e-26 unknown protein AT3G29075 91 / 3e-21 glycine-rich protein (.1) AT1G11440 50 / 5e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018397 [exp] 46 / 1e-05 AT1G11440 98 / 2e-23 unknown protein Lus10007616 [exp] 46 / 1e-05 AT1G11440 100 / 2e-24 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G087200 [exp] 129 / 4e-34 AT5G39570 112 / 3e-27 unknown protein Potri.004G127400 [exp] 126 / 2e-33 AT5G39570 139 / 4e-37 unknown protein Potri.011G032700 [exp] 46 / 1e-05 AT1G11440 71 / 1e-13 unknown protein Potri.004G029500 [exp] 42 / 0.0002 AT1G11440 68 / 2e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029322 pacid=23139886 polypeptide=Lus10029322 locus=Lus10029322.g ID=Lus10029322.BGIv1.0 annot-version=v1.0 ATGCCGTACTATTCCAGAGCTGACGAGGACGCCGTCGACGACTTTGACGAGTACGATCCAACTCCGTACGGAGGAGGCTACGACCTCCACGTGACCTATG GCCGTCCGATCCCTCCCAGCGAGGAGACCTGCCACCCGATGAACCGATCTTCAGCCGACGAGATTGACTACGATCGTCCGAACTACTCTTCCCACTCGGA GCCCTCCGCATATGGCGACAACGCTCTCAACTCCGAGTACAGCAGCTATTCCCGCCCCAAGCCTCGTCCTGGTCCCGCCTACGGCTTCCAGCCCGGCGGC GCCTCTGGCGGCGATGGATATGGCGGGAGAACTGAGAATGAGTACGGATCTGGCGGCGGTGGATATGGCGGGAGAACTGAGTCGGAGTACGGATCTGGCT ATGGTCGGAAGCAGGAGCCTGAATCTGAGTATGGATCTGGCTACGGCCGACAACAGCAGGAAGCTGAATCCGAGACTGAAACGGAATATGAAGGTGGAGG CTCCGAGTACGGGAGTCGGAAGCAGGGATATGGAGAGGAGGAAGGTGAAGGAGGTTATGGAAGCCGTCAGGAGGAGACAACTGAGTATGGCTCCGGTGGT GGTTATCGGAGGAGCAAAGAGGGCTACGAGAAGCCTTCTTATGGTAGGCGCAAGGATGATGACGAGGACAATGAGGAGTCTTCTCGCAGCAAGTATGGTC ATGGTGGTGATGATGAAGAAGGCTATGGCCGCAAAAAATACGGGGATAACGACTCTGATGACGAAGATGAGGAGAAGAAGCACCGTTACAAGCATCACCA CCACCGTGACAATGATGATGATGAATGA
AA sequence Show only first row Show all	>Lus10029322 pacid=23139886 polypeptide=Lus10029322 locus=Lus10029322.g ID=Lus10029322.BGIv1.0 annot-version=v1.0 MPYYSRADEDAVDDFDEYDPTPYGGGYDLHVTYGRPIPPSEETCHPMNRSSADEIDYDRPNYSSHSEPSAYGDNALNSEYSSYSRPKPRPGPAYGFQPGG ASGGDGYGGRTENEYGSGGGGYGGRTESEYGSGYGRKQEPESEYGSGYGRQQQEAESETETEYEGGGSEYGSRKQGYGEEEGEGGYGSRQEETTEYGSGG GYRRSKEGYEKPSYGRRKDDDEDNEESSRSKYGHGGDDEEGYGRKKYGDNDSDDEDEEKKHRYKHHHHRDNDDDE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39570			unknown protein		Lus10029322 [exp]	0	1
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Lus10029922 [exp]	13.2	0.7734
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Lus10004389 [exp]	13.6	0.7264
AT2G41150			unknown protein		Lus10022403 [exp]	14.6	0.7781
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10008341 [exp]	15.0	0.7441
AT1G20450		LTI45, ERD10, L...	LOW TEMPERATURE INDUCED 45, LO...		Lus10005652 [exp]	15.9	0.7229
AT5G60160			Zn-dependent exopeptidases sup...		Lus10022460 [exp]	18.7	0.7374
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Lus10011751 [exp]	20.3	0.7312
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10003077 [exp]	20.9	0.7649
AT5G03490			UDP-Glycosyltransferase superf...		Lus10036840 [exp]	22.4	0.6768
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Lus10023674 [exp]	24.2	0.7433

Compare expression of checked genes

Lus10029322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.