Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58480 420 / 2e-142 calmodulin-binding family protein (.1) AT3G13600 398 / 1e-133 calmodulin-binding family protein (.1) AT2G26190 351 / 3e-116 calmodulin-binding family protein (.1) AT4G33050 343 / 2e-113 EDA39 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) AT5G57010 325 / 2e-106 calmodulin-binding family protein (.1) AT3G52870 307 / 5e-100 IQ calmodulin-binding motif family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016219 [exp] 702 / 0 AT3G58480 569 / 0.0 calmodulin-binding family protein (.1) Lus10039178 [exp] 393 / 3e-131 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Lus10016052 [exp] 390 / 6e-131 AT3G13600 582 / 0.0 calmodulin-binding family protein (.1) Lus10025173 [exp] 389 / 1e-130 AT3G13600 575 / 0.0 calmodulin-binding family protein (.1) Lus10013759 [exp] 385 / 2e-128 AT3G58480 690 / 0.0 calmodulin-binding family protein (.1) Lus10013526 [exp] 349 / 5e-115 AT5G57010 581 / 0.0 calmodulin-binding family protein (.1) Lus10014872 [exp] 344 / 4e-113 AT4G33050 577 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Lus10003257 [exp] 328 / 2e-108 AT3G52870 576 / 0.0 IQ calmodulin-binding motif family protein (.1) Lus10035595 [exp] 328 / 1e-107 AT3G52870 575 / 0.0 IQ calmodulin-binding motif family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G197500 [exp] 442 / 4e-150 AT3G58480 588 / 0.0 calmodulin-binding family protein (.1) Potri.016G063000 [exp] 436 / 1e-148 AT3G58480 587 / 0.0 calmodulin-binding family protein (.1) Potri.003G218800 [exp] 407 / 1e-136 AT3G13600 734 / 0.0 calmodulin-binding family protein (.1) Potri.001G006200 [exp] 402 / 3e-135 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Potri.018G061901 [exp] 376 / 7e-126 AT4G33050 601 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.001G005600 [exp] 358 / 2e-121 AT3G13600 431 / 4e-148 calmodulin-binding family protein (.1) Potri.006G147900 [exp] 359 / 6e-119 AT2G26190 513 / 2e-178 calmodulin-binding family protein (.1) Potri.006G226400 [exp] 356 / 6e-118 AT4G33050 598 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G114700 [exp] 323 / 8e-106 AT3G52870 561 / 0.0 IQ calmodulin-binding motif family protein (.1) Potri.006G226500 [exp] 285 / 1e-92 AT4G33050 433 / 9e-151 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029324 pacid=23139975 polypeptide=Lus10029324 locus=Lus10029324.g ID=Lus10029324.BGIv1.0 annot-version=v1.0 ATGGAAACCGAGGCTTCTTGTACTAGTAGTATATCTGACGCCGTACAAAAACCAGATCATGATCATGATCATCAGAGTAGCTTGTCACGCGAGCAAATCC TGATGCGGCGGCAACGGCGGCGGCAGGAGACCACAAGGTATCATCAACATCATCATCATCATGCAGCAACAAGGTTGCAGAAGGTGTACAAGAGTTTCAG GACCAGGAGGCAGCTCGCTGATTGTGCCGTTCTTGCCGAGCAGAGATGGTGGAAGGTTTTGGATTTTGCCGAGCTGAAGAGAAGCTCGATATCTTTCTTC GACATCCACCATTCAGAGAGCGCTGCTTCGAGGTGGTCCAGAGCAAGAACGAAAGCGGCCAAGGTGGGGAAAGGTTTGTCAAAAGATGAAAAGGCTAGGA AGCTAGCCCTGCAACATTGGCTCGAGGCAATCGATCCGCGGCATCGCTACGGCCATAATCTTCAATTCTACTATGTGACATGGCTTCGATGTGAGAGCAG ACAGCCATTCTTTTTCTGGCTTGATATTGGAGGAGGGAGAGAAGTGAATATCGACAGATGTCCTAGATCAAAGCTCTACCAGCAGTGCATCAAGTATCTC GGCCCGGTTGAAAGACTGGCTTATGAAGTGGTAATTAAGGATGCCAAATTCGTCCATAAGGAAACAGAAGAACTCCTTGACACAACCAAAGGGCCAAAAG ATGCTAAGTGGATATTTGTTCTCAGCACATCAAAGACTTTGTATGTGGGACAGAAAAACAAAGGTACATTTCAGCATTCAAGCTTCTTGGCAGGTGGTGC AACACTCTCCGCCGGAAGATTGGTCGTCGAACAAGGTGTTCTAAAGGCAATTTGGCCTCACAGTGGACATTACCTTCCAACAGAAGAGAACTTTCAAGAG TTCATATCATTCCTCATGGACCATAATGTTGATCTCATTGATGTCAAGAAAAGTCCAACTGAGGAGGAAGAGGAAAGCAGCAACGATCAAGGCAGATCAT CAGCAATCACAGACGACGAAAGCTCGATCCACGGGAAGAAGAACAATAACGAAAACAGAGAGTATCGTCCAAAGCTAGCCAACAGAATCGGCTGGAAGAT GAGCAAGCTCGCGATACCAATCAGAGAAGAGATCGTGTGCGACATTTTCAAACCAGAGCTCCAGAATCTCAACAATCCTCCTCCTCCTCCTCCAGATGCA GAATCCGAACGCGCCGACGACGAAGAAGAAGAAGAAGATGAAGAAGAAGGATACGAGACGGCAGAGGACTCGTTCCTGACGGAGGAAGACTTCATGGTCC CGAAGATCACATCACTGGACGAGGAGGACGAGGAAGACGAAGGAGAAGAGAAAGAGGAGAAACGGCGGAAGAGCGGCGGCCGGTTGTAG
AA sequence Show only first row Show all	>Lus10029324 pacid=23139975 polypeptide=Lus10029324 locus=Lus10029324.g ID=Lus10029324.BGIv1.0 annot-version=v1.0 METEASCTSSISDAVQKPDHDHDHQSSLSREQILMRRQRRRQETTRYHQHHHHHAATRLQKVYKSFRTRRQLADCAVLAEQRWWKVLDFAELKRSSISFF DIHHSESAASRWSRARTKAAKVGKGLSKDEKARKLALQHWLEAIDPRHRYGHNLQFYYVTWLRCESRQPFFFWLDIGGGREVNIDRCPRSKLYQQCIKYL GPVERLAYEVVIKDAKFVHKETEELLDTTKGPKDAKWIFVLSTSKTLYVGQKNKGTFQHSSFLAGGATLSAGRLVVEQGVLKAIWPHSGHYLPTEENFQE FISFLMDHNVDLIDVKKSPTEEEEESSNDQGRSSAITDDESSIHGKKNNNENREYRPKLANRIGWKMSKLAIPIREEIVCDIFKPELQNLNNPPPPPPDA ESERADDEEEEEDEEEGYETAEDSFLTEEDFMVPKITSLDEEDEEDEGEEKEEKRRKSGGRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58480			calmodulin-binding family prot...		Lus10029324 [exp]	0	1
AT5G52390			PAR1 protein (.1)		Lus10040702 [exp]	5.8	0.6548
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Lus10004029 [exp]	43.9	0.5848
AT2G34930			disease resistance family prot...		Lus10016342 [exp]	45.0	0.6282
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10013582 [exp]	49.7	0.6170
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Lus10016115 [exp]	53.9	0.6263
AT1G30800			Fasciclin-like arabinogalactan...		Lus10023390 [exp]	55.9	0.5412
AT5G17430	AP2_ERF	BBM	BABY BOOM, Integrase-type DNA-...		Lus10011303 [exp]	68.5	0.5339
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10039138 [exp]	69.5	0.5314
					Lus10028095 [exp]	90.1	0.5053
					Lus10011908 [exp]	92.5	0.5151

Compare expression of checked genes

Lus10029324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.