Plant FIBer expression Database

Lus10029325 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G11950 484 / 3e-164 ATHST TRAF-like superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016218
[exp]
887 / 0 AT3G11950 488 / 4e-168 TRAF-like superfamily protein (.1.2)
Lus10037698
[exp]
50 / 6e-06 AT5G64360 184 / 9e-51 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G062900
[exp]
486 / 7e-168 AT3G11950 485 / 4e-169 TRAF-like superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0389 TRAF PF02176 zf-TRAF TRAF-type zinc finger
Representative CDS sequence
>Lus10029325 pacid=23139853 polypeptide=Lus10029325 locus=Lus10029325.g ID=Lus10029325.BGIv1.0 annot-version=v1.0
ATGTCAGCAACAGAGAAAATCCATCCTCCACTGACAGACGTGGAGCTCGTACCGGAGAAAGAGAAGATCGAAGACGTGAAAGAGCCAGCACCAGCATTCC
CATGTCAGCTTGCAGACATCGAGCTAGTTTACAAGATAGCTCAATCCTTTCTACCAGGGTTAGCCACAGCTTGTGTCGACAACACGACCGGGGGCATCTT
TCGAACCCCCGGATCAGTAGCAGCTGACCTGAGAACTGAAATGATCAACTATCTCACGCAGAGAAGCGAAACCTTCATTGCTGAATCCGTTATTCTGATT
GGCGATGATCCACAGACGGATACCCCTACCCATCCTTTCGACATTGTGTCCGATTTCGTTGACGATTTTGCAAGCACAAAGAGGAACTTCTTCAGCCGGG
TCTCCGGGTGGCTGCTGAGCGAAAAGAGGGAGGACAAGATCGACGATTTCGTGCAGGACATGGAGCTGAATGGGTTCTGGCTGGTCGACAAGAGATCGAC
TGTTGCGGAAGCTTTGCTAAAAAATGTAGATTTCAAGAACAGGTTCCACTGTGACCAGAAATTCAACACGGAAGAGGAGCTAGCGGAACATGTTGGAGTA
TGCCCGTTTCGGTCTTTGAACTGTAACAACGAAGGGTGTGATGTTACGTTCTCTGATAAGAACATGAACGACCATGACTCGATTTGTCCGTTCAAGATCA
TTCCGTGCGAGCAGAATTGCTCGGAGCATATAATGAGACGCGACATGGACAGGCATTGCATTACCGTGTGCAAAATGAAGCTCGTCGCTTGTCCCTTTTA
CGCAGTTGGTTGCGAGGCGAACGTGCCTAACAGCATGATGGATGAGCATCGTACCGACGAAGTTGGGTCCCACGTGTTGTCGACTCTTCTGAGTATCCAC
AAGGAAGCTTCTGTCGAGGATCTAAAGCCTCGTGCCGTCCAAGTACTCGAGTTGTCTTCTGGGCTGGCGGAAGCGAGAGATGTTAGATCTTTGACTCGCA
GAATCAAGAATATCGAAGCGAAGTTGGGACCGTTGGAGATTAAGCCTCGTCAGAAGGACGAAGCTGACTCGCCTATGAAGAATTCGGAGAAGGCTGTTGA
GACTGAGAACACAGCTAGTGAAGATAAGGCTACAGCAGAGGTCAGCAAAGAGATTACCAGAGCTGTAGAGAATCTTCAGAAGGAATCTAATGAGACTGCT
AATAAGGTTACCGAAGATTCGTCTGAAGCTGCAAAGCCTGTTGAAAAGGAATCCAATGAGCTTGTTGAAAAGGAATATAATGAGCCTGCTTCTGCAAAGA
AAGTTAGTGAAGAATCGACTGAAGCTGCAAAACCTATTGGAAAGGAATCCAATGAGCCTGCTGCGAGCAAGATTAGCGAGGAATCGACTGAAGCTGCAAA
GCCTGTCGAGAAGGAATCTAATGATCCTTCTTCTGCAAGCAAGGTTAACAAAGAATCAACCGAAGCTGCAACCATTGTTGAAAAGGAATCTAACGAGCCT
GCTGCAAAGAACGTTAGCGAAGAAAAATCTACTGAAGCTGCAACCACTGTTGAAAAGGAATCTAATGAGCCTGCTACAGACAAGGTTAGCGAAGAATCGA
CCGAGGCTGCAAAGTCTGTCGAAAAGGAATCTAATGAATCAGATCACAACCTCGAAAAGGAAGTAACTGAAGCTGAATTAACCGTCATCAAAGAACCAGC
CAAGGTTTCGACTAACCTTGGCAAGGAATCAACTGACTCTACAGACAAACACGGCGAGGACACCAAGGTTGCAGAGAAGAATGTTGCCACAGAATCATTA
GAAACAGCAGACGGAATCAACGAATCGGCCAATGCAATTCAGAACCTCAACAAGGAGCTAACAGAAGCTACTGAAATGGCTATTCAAGAACCAGCCAAAC
CTGGTAATCACGAGTCAACTGATGCTGCAAATAAACCTCGAACTGAACAGCTCGAGCCTGTAGAGAATGTTGGAGACGAACTAATTAAGCCTGTAGAGGA
TGGTGTTGGCAAGGAACCAAGTGAAGATGCAAAGATCAAAAGTGAAGACCCTGCCCCAAAAAATTGA
AA sequence
>Lus10029325 pacid=23139853 polypeptide=Lus10029325 locus=Lus10029325.g ID=Lus10029325.BGIv1.0 annot-version=v1.0
MSATEKIHPPLTDVELVPEKEKIEDVKEPAPAFPCQLADIELVYKIAQSFLPGLATACVDNTTGGIFRTPGSVAADLRTEMINYLTQRSETFIAESVILI
GDDPQTDTPTHPFDIVSDFVDDFASTKRNFFSRVSGWLLSEKREDKIDDFVQDMELNGFWLVDKRSTVAEALLKNVDFKNRFHCDQKFNTEEELAEHVGV
CPFRSLNCNNEGCDVTFSDKNMNDHDSICPFKIIPCEQNCSEHIMRRDMDRHCITVCKMKLVACPFYAVGCEANVPNSMMDEHRTDEVGSHVLSTLLSIH
KEASVEDLKPRAVQVLELSSGLAEARDVRSLTRRIKNIEAKLGPLEIKPRQKDEADSPMKNSEKAVETENTASEDKATAEVSKEITRAVENLQKESNETA
NKVTEDSSEAAKPVEKESNELVEKEYNEPASAKKVSEESTEAAKPIGKESNEPAASKISEESTEAAKPVEKESNDPSSASKVNKESTEAATIVEKESNEP
AAKNVSEEKSTEAATTVEKESNEPATDKVSEESTEAAKSVEKESNESDHNLEKEVTEAELTVIKEPAKVSTNLGKESTDSTDKHGEDTKVAEKNVATESL
ETADGINESANAIQNLNKELTEATEMAIQEPAKPGNHESTDAANKPRTEQLEPVENVGDELIKPVEDGVGKEPSEDAKIKSEDPAPKN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G11950 ATHST TRAF-like superfamily protein ... Lus10029325
[exp]
0 1
AT3G05420 ACBP4 acyl-CoA binding protein 4 (.1... Lus10029902
[exp]
1.0 0.9431
AT5G07620 Protein kinase superfamily pro... Lus10032493
[exp]
3.3 0.8847
AT4G34450 coatomer gamma-2 subunit, puta... Lus10023580
[exp]
5.2 0.9175
AT4G34450 coatomer gamma-2 subunit, puta... Lus10040465
[exp]
5.3 0.9276
AT5G11980 conserved oligomeric Golgi com... Lus10026437
[exp]
5.3 0.9024
AT2G26680 unknown protein Lus10043275
[exp]
7.3 0.8882
AT1G78570 ATRHM1, RHM1, R... REPRESSOR OF LRX1 1, ARABIDOPS... Lus10005560
[exp]
9.4 0.8901
AT1G13860 QUL1 QUASIMODO2 LIKE 1 (.1.2.3.4) Lus10036883
[exp]
11.6 0.8993
AT3G12110 ACT11 actin-11 (.1) Lus10021057
[exp]
11.7 0.8697
AT3G24350 ATSYP32, SYP32 syntaxin of plants 32 (.1.2) Lus10033080
[exp]
12.4 0.8482

Lus10029325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.