Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03220 258 / 2e-89 Mediator complex, subunit Med7 (.1) AT5G03500 254 / 8e-88 Mediator complex, subunit Med7 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016217 [exp] 304 / 2e-107 AT5G03500 269 / 7e-94 Mediator complex, subunit Med7 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G062800 [exp] 278 / 2e-97 AT5G03220 249 / 5e-86 Mediator complex, subunit Med7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05983 [flax] [poplar] Med7 MED7 protein
Representative CDS sequence Show only first row Show all	>Lus10029326 pacid=23139980 polypeptide=Lus10029326 locus=Lus10029326.g ID=Lus10029326.BGIv1.0 annot-version=v1.0 ATGGCGACAGCTACATATCCACCTCCTCCGCCGTATTACAGACTGTATAAAGATTACTTGCAGAATCCCAAATCCGCCCCCCCGCCTCCTCCTCCAGTTG AAGGAACGTACGTCTGCTATGGGGCAAACTACACTACTGATGATGTTCTTCCGAGCTTGGAAGATCAGGGAGTGCGTCAGCTGTACCCTAAGGGACCTAA TGTTGATTTCAAGAAGGAATTAAGATCATTGAATAGAGAATTGCAGCTGCACATTTTGGAGCTTGCTGATGTTCTTGTCGAGAGACCGTCACAGTACGCT CGGAGAGTGGAAGACATATCCCTTATTTTTAAGAATTTGCACCACCTTCTCAATTCGTTACGGCCCCATCAGGCAAGAGCCACGTTGATTCACATTCTGG AGCTTCAGATTGAACGACGCAAACAAGCTGTGGAGGATATTAAGAGGAGGAGAGAAGAAGCACAGAAGCTTCTCAGGGAGGCTGTTGAAACGTTAGATGG ACAGTAG
AA sequence Show only first row Show all	>Lus10029326 pacid=23139980 polypeptide=Lus10029326 locus=Lus10029326.g ID=Lus10029326.BGIv1.0 annot-version=v1.0 MATATYPPPPPYYRLYKDYLQNPKSAPPPPPPVEGTYVCYGANYTTDDVLPSLEDQGVRQLYPKGPNVDFKKELRSLNRELQLHILELADVLVERPSQYA RRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIERRKQAVEDIKRRREEAQKLLREAVETLDGQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03500			Mediator complex, subunit Med7...		Lus10029326 [exp]	0	1
AT2G30620			winged-helix DNA-binding trans...		Lus10022001 [exp]	3.9	0.8372
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10022129 [exp]	7.6	0.8211
AT5G66240			Transducin/WD40 repeat-like su...		Lus10017157 [exp]	8.4	0.8103
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10002412 [exp]	10.7	0.8181
AT4G40045			unknown protein		Lus10043427 [exp]	11.9	0.7282
AT1G06060			LisH and RanBPM domains contai...		Lus10004152 [exp]	13.5	0.7172
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10013088 [exp]	17.8	0.8137
AT5G22120			unknown protein		Lus10008366 [exp]	23.8	0.7816
AT3G45890		RUS1	ROOT UVB SENSITIVE 1, Protein ...		Lus10001413 [exp]	24.3	0.6566
AT1G09815		POLD4	polymerase delta 4 (.1)		Lus10020362 [exp]	25.5	0.7710

Compare expression of checked genes

Lus10029326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.