Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11964 2001 / 0 RNA binding;RNA binding (.1) AT3G51110 67 / 9e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G29060 51 / 8e-06 EMB2726 embryo defective 2726, elongation factor Ts family protein (.1.2) AT5G41770 49 / 4e-05 crooked neck protein, putative / cell cycle protein, putative (.1) AT3G03710 47 / 0.0002 PDE326, PNP, RIF10 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) AT1G12800 46 / 0.0003 Nucleic acid-binding, OB-fold-like protein (.1) AT5G28740 45 / 0.0005 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016216 [exp] 3427 / 0 AT3G11964 2151 / 0.0 RNA binding;RNA binding (.1) Lus10034294 [exp] 52 / 4e-06 AT5G41770 1153 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10041477 [exp] 52 / 4e-06 AT5G41770 1161 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10022346 [exp] 50 / 3e-05 AT5G28740 905 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041573 [exp] 49 / 5e-05 AT5G28740 1386 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039811 [exp] 47 / 0.0002 AT4G03430 1560 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Lus10001332 [exp] 45 / 0.0007 AT3G03710 954 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G062600 [exp] 2406 / 0 AT3G11964 2209 / 0.0 RNA binding;RNA binding (.1) Potri.001G094400 [exp] 55 / 7e-07 AT5G41770 1117 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.014G148500 [exp] 53 / 2e-06 AT3G23700 439 / 2e-153 Nucleic acid-binding proteins superfamily (.1) Potri.003G137200 [exp] 52 / 5e-06 AT5G41770 1150 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.004G035600 [exp] 50 / 3e-05 AT5G28740 1418 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G135300 [exp] 48 / 9e-05 AT4G03430 1470 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Potri.019G040100 [exp] 46 / 0.0004 AT3G03710 1197 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF05843 [flax] [poplar] Suf Suppressor of forked protein (Suf) CL0021 [flax] [poplar] OB PF00575 [flax] [poplar] S1 S1 RNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10029327 pacid=23139869 polypeptide=Lus10029327 locus=Lus10029327.g ID=Lus10029327.BGIv1.0 annot-version=v1.0 ATGGCAGCTCCGTCTTCTAAGAAGAGGACTCAGAACAGGAATCCTAAAGAAGCTCCGAAGTTCAACAAGGATTCTAAGAAGCCATTCAAAGCTAAGAAGA AGGACTCTACCGATGATGTTGCCAAAAAAACTGAATCCGCCGCCATGTCTTTGCAGCTGGAAGATGACGTCCCTGACTTTCCCCGAGGTGGAGGGAGCAC TCTAAGCCAGAAAGAGCGTGATGATATACGATCGAAAGTTGATGCGGAGTTTGAGGCTGGCGAAATGGGTGTTAGAAAGAACAAGAAGGGTAAGAAACTG CGAAAGAAACAAGTAGACCCAGACGATTTCGGTTCCCTCTTTGGAGATGGGTTAACTGGCAAGCTGCCCAAGTTTGCTAATAAGATCACAACAAAGAATA TTTCTCCTGGAATGAAGCTCTGGGGAGTTGTTGCTGAGGTAAATGAAAAGGACCTTGTAATTAGTCTCCCTGGAGGACTGCGTGGATTAGTTCGTAACAC TGACGCTGTTGATTCTATTTGGGATGATGAAACTAAGGAAAATGAGGGTTATCGTCCCAACACATTCCATGTGGGGCAGCTGGTTTCCTGTATTGTCTTG CAGTTGGATGACGATAAAAAGGGGAAAAGAAAGATATGGCTTTCTCTGTGCCTTTCATTATTACACAAGGCGTTTTCACTGGACACAATACAGGAAGGGA TGGTACTCACATCATATGTGAAGAGCATTGAAGATCATGGCTATATTCTTCACTTCGGAGTACCTTCTTTTTCTGGGTTTCTGCCTAAGAGCAGCCAGTC TGACTCACGTGATACTGTGGTGAAGCCTGGTCAACTCTTGAAAGGGGTTATTACTAAGATTGATAAAAACCGGAAAGTTGTTTTTTTGAGTGCTGACAAG GATATGGTGTCGAAATATGTGATGTCGGATGTTAAAGGAATGTCAATCGATCTTCTCATTCCTGGAATGATGGTGAATGCTCGTGTACAGACAACACTTG AAAATGGTGTTATGTTCTCCTTCCTTACATACTTCACTGGAACTGTTGATATGTTCCATTTGCAAAGTTCTTTTCCTGCTACCAACTGGAAAGATGATTA TAGCAAGAATAAGAAGGTTATTGCTCGTATATTATTTATCGACCCGTCTACTAGAGCTGTTGGCTTGACTCTCAATCGACATCTGGTTCAAAACATAAGT CCTCCAACGCTTGTCAAAGTCGGAGATATTTGTGACAATGCAAAAGTGGTTTGGGTAGATAAAAATATGGGGCTCTTGCTTGAGATCCCTTCTATTCCAG TATCTATTCCAGCTTTTGTTAGTATACCTGATGTTGCTGAAGCTGAAGTGCCAAAGCTGGAAAAGAAGTTTAAGGAGCGCAGTATTGTCCGTGTGAGAAT AATTGGTTTTAGGCATTTGGAAGGGCTTGCTACAGGAACTCTGAAGGAAAGTGCTATTGAAGGCCCTGTTTTTACTCACTCGGAAGTTCAACCAGGAATG GTGGTGAGGGGTAAAATCATAGCAGTGGATAGCTTTGGTGCTATCGTGCAGTTTCCTGGTGGTTTGAAGGCACTTTGCCCTCTTCAGCACATGTCTGAAT TTGAAATTGCAAAGCCGAGGAAAAAGTTCCAGGTTGCTGCCGAACTAACTTTTCGTGTGCTTGGCTGCAAGTCGAAAAGGATAACTGTTACTCACAAGAA AACACTTGTTAAGTCAAAACTTCCAATCATTAGTTCATATGCAGAAGCTATTGATGGACTAGTTGTACATGGTTGGATAACGAAGATTGAAAAGCATGGA TGCTTCGTCCATTTTTACAATGGAGTCCAAGGATTTGCTCCAAGGCTAGTTATACAACTTCTATACATATTTTTAGCCTTGCTTATACTTGTTATGGAAA CGGCAACACCATATGTGGAGCTTTGTGTTACCATTTTATCTGAGCTTGGCTTAGAACCAGGAAGTGAGCCAAACTCAATGTATCACCTTGGCCAAGTTAT CAAATGCAGAGTAACAAGCTCTGTTCCTTCTTCTCGTCGAATCAACCTAAGCTTCATGATGAAGGCCACAAGCCTTTCTGAAGAAGATTCCTTGAAGCTG GGGAATGTCGTTACAGGAGTGGTTGAGAAAGTTACTCCATCTGTTGTTGTTGTTAATATTAATGGGAAGCAATACCTCAAGGGTACCATTGCTACTGAAC ATATGGCTGATCATCATGGACTAGCGGTCTTGATGAAGTCGGTCTTGAAGCCTGGACATGAATTTGACAAACTCGTAGTCCTTGATATTGAGGGCAATAA TGTAATACTCTCGGCCAAATACTCGCTCATCAATTCAGCGCAAGAGCTTCCTTCAGATATAAGTCAGATTCGTCCACACTCAATTGTCCATGGTTACATC TGCAACATAATTGAAACCGGCTGCTTTGTTCGCTTTCTTGACCGGTTGACTGGTTTCTCCCCTAGAAGCAAGGGAATGTATCTTTCAATGGATGATTCTA GTGTTCAGCTTTCGGAAGCATTCCACATAGGGCAGTCTGTGCGTAGTAATATCGTTGAGGTGAATAGTGAAACAAATAGAGTCACATTGTCCCTGAAGCA GTCAATTTGTGCATCAGCTGATGCATCTTTTCTTCAGGGTTATTTTCTCTCTGATGACAAGATTGCAAAGTTCCAGTCAACTGATGTCGAAGGTCCAGGC TTCCAATGGGTTGAAGAATTTGGAGTTGGCAGCATCACTGAAGGAAGAATCCAAGAGTCCAAAGAGTTTGGAGTTGTCGTGAGCTTCGACAAATATAAAA ATGTTCTTGGTTTTATTACAAATTATCAATTGGGCGGGACGACCATCGGCACAGGATCGATCATACAAGCAGCTATACTAGACGTTGCCAGGAGTGAACG CCTAGTTGACTTAACCTTGAAACCAGAGCTCTTGAATAAATTCCGAGATCAGAGCTCCAGTAAAAAGAGTCAAAAGAAGAAACGCAAAAGTGAAGCGTGT AAGGACTTGGAAGTGAATCAAAAAGTGAATGCCATTGTAGAGATTGTGAAGGAGAATTACATGGCAAGTGTTCTTTCACTCCCGGAATACAATTACGCAA TAGGCTATGCTTCATTATCCGACTACAATTCTCAGAGACTGCCTCACAAGCAAATTGCGAATGGACAAAGTATTACAGCTACCATTGTAGCCCTTCCAAG CCCTTCCACAACTGGCAGGCTGCTTTTGATGCTCAATTCTACCGGCCAGGTTACTGAGACATCCAGTTCAAAGAAGGCAAAAAAGAAGGCTAGCTATGGT GTTGGATCACTTGTTCAAGTGGAGGTTAATGAAAAGAAGCCACTTGAAATGCGAGTGAAATTTGGTGCTGGTCTTCGTGGAAGAATCCATGCGACGGAGG CAACTAATGCTGGAGTCATTGAAGACCCATTTAGTGAATTCCGAACTGGTCAAACTTTGACGGCTAGGATTGTTGCAAAGTCTGGTCAACCGAACATTAA GAACGGTGTGCTGTGGGAACTGTCTCTGAAAGCTGAAGTGCTGGCAGATGAAAGTGACAACATATCTGACAACCATGAGTTTTCATCTGGACAATGTGTC GGCGGCTATGTATATAAAGTAGACAGTGAATGGGTTTGGTTAGCCATATCTCGAACCGTAAATGCACAACTATTTATATTAGATAGTTCTTCTGAACCTG GTGAGCTTCAGGAATTTCAGAACCTTTTTGGTGTGGGAAAGCTTGTCAGGGGGTATGTTTTAACATACAACAGAGCAAAGAAATTGCTTCGTCTTGGTAT GCATCCATTACGTCCGCTCAAGCAAATTGACAATGTGGCCCCTCATATTCACGAAGGAGATGTGGTCGGGGGGAGAATTTCAAGGGCACTTCCAGGTGTA GGTGGACTGTTTGTCCAAATTGGCCCTCATTTACATGGTAAAGTTCATTTTACTGAACTTAAAGATGAGTGGACTGCTGACCCTTTGGCTGAGTATCCTG AAGGACAGTTTGTCAGATGCAAGGTTCTAGAGATCGGCCTGTCAATCAAGGGCACTGCTCATATAGATCTGTCACTACGTTCATCTTTTGATGGCATGCG CGGTCTGAGCTCAGTGGAATCATCTGGAAACACGCATGTCGAAAAGATTGAGGATCTTCACCCAAATGATGTTGTTCAGGGTTATGTGAAGAGTATTACG GCAAAAGGATGTTTCATTTTGCTTTCACGTAAGCTCGAAGCAAAAATACTTGTCTCAAATCTATCTGATGGATATATTGAGAAACCCGAAACAGAATTCC CCGTGGGTAAACTTGTTGTTGGAAGGGTATTGTCCGTGGAGCCTTTGTCAAAACGAATTGAAGTTACTCTGAGGACAACAAAACCTGGCAATGAATCAAA ATCTCAGGGGAATGATTTAAGCCACCTGCGTGTTGGAAGAATAGTTTCTGGCTCGATTAGGCGAGTGGAACCATATGGTCTATTTGTAACACTAAGCAAT TCAAACATGGTTGGGTTGTGTCACATATCGGAGCTTCCAGCTGATCAGGCCAACGACACTCTAAGTAACTATAAAGCTGGGGAGAAGGTTACGGTGAAAA TTCTACAGGTTGATGAGGAAAGACGTCGTATCTCTCTTGGAATGACAGACTTGGATATGGAAAACAACGACGATGAATCTGTTGAAGGTGATGAGGAAGT CGGTGAGTCGGATGATGATGACACTGACACCAACATTACACTGCTACCCGAGAGAGACGATTCAGAATCAGAAGACGAAAGTAAAGAATGTCCATTTCCC GAAGCAGAATCTAGAGCTTCCATTCCTCCTTTGGAGGTCACCCTGGATGATATGGAAGAGGATCAAGCAGACGATCGGGTAGCTTCAGATAACCAGGATC ATAACGTTGAGCCTGGTACTAAAGACAAAAAGAAAAAGGAAAAATGTAAAACGAGGGGAGAAAGGGAGAAAGAGATCAGAGCTGCTGAAGAAAGACTGCT GGAAAAGGATGTTGTACCAGAAACTGCTGATGAGTTTGAGAAACTCCTGCGTGGCTCTCCCAATAGTAGCTTTATTTGGATCAAGTACATGGCTTTCTTG CTTAATACGTCTGATGTAGAGAAAGCTCGTTCAGTGGCTGAAAGGGCTCTGAGGACGATAAGTTTCCGTGAAGAGGGCGAGAAACTGAATATCTGGGTAG CTTACTTCAATTTGGAAAACCAGTACGGAGTTCCTCGAGAGGAGGCGGTCAACAAATTATTCACAAGAGCATTGCAATTCTGCGATTCGAAGAAGGTTCA TATGGCACTATTGGGGATGTACGAGAGGACTGAACAAGATAAGTCTGCTGATGAACTTGCCAGCAAAATGGTCAGGAAGTTTAAGCAATCATGCAAGGTT TGGTTAGCGAGAATGCGGAGGGTTATAAGCCAAGAGGAAGACAAAGTTCAGTCAGTTGTACAACGAGCCCTAATGTGCCTTCCACGGCGTAAGCACATCA AATTCATCACGCAAGCTGCACTCCTCGAGTTCAAAAGCGGGCTTGCTGATAGAGGCCGGAGCATGTTTGAAGGAGTTTTGAGAGAGTACCCGAAGCGAAC GGACTTGTGGAGCATATACATCGACCAAGAAATCAAGCATGGAGATGCTGATATGATCCGTTCATTGTTTGAGAGAGCAATTACGCTGAGCCTAGCGCCT AAAAAGATGACATTCTTGTTCAAGAAGTATCTCGAGTACGAGAAGTCAATGGGCGACGTTGAAAAAATCGAGGCTGTGAAGCAGAAAGCCCTCGACTATG CTCGATCTGAACTGGTTTAG
AA sequence Show only first row Show all	>Lus10029327 pacid=23139869 polypeptide=Lus10029327 locus=Lus10029327.g ID=Lus10029327.BGIv1.0 annot-version=v1.0 MAAPSSKKRTQNRNPKEAPKFNKDSKKPFKAKKKDSTDDVAKKTESAAMSLQLEDDVPDFPRGGGSTLSQKERDDIRSKVDAEFEAGEMGVRKNKKGKKL RKKQVDPDDFGSLFGDGLTGKLPKFANKITTKNISPGMKLWGVVAEVNEKDLVISLPGGLRGLVRNTDAVDSIWDDETKENEGYRPNTFHVGQLVSCIVL QLDDDKKGKRKIWLSLCLSLLHKAFSLDTIQEGMVLTSYVKSIEDHGYILHFGVPSFSGFLPKSSQSDSRDTVVKPGQLLKGVITKIDKNRKVVFLSADK DMVSKYVMSDVKGMSIDLLIPGMMVNARVQTTLENGVMFSFLTYFTGTVDMFHLQSSFPATNWKDDYSKNKKVIARILFIDPSTRAVGLTLNRHLVQNIS PPTLVKVGDICDNAKVVWVDKNMGLLLEIPSIPVSIPAFVSIPDVAEAEVPKLEKKFKERSIVRVRIIGFRHLEGLATGTLKESAIEGPVFTHSEVQPGM VVRGKIIAVDSFGAIVQFPGGLKALCPLQHMSEFEIAKPRKKFQVAAELTFRVLGCKSKRITVTHKKTLVKSKLPIISSYAEAIDGLVVHGWITKIEKHG CFVHFYNGVQGFAPRLVIQLLYIFLALLILVMETATPYVELCVTILSELGLEPGSEPNSMYHLGQVIKCRVTSSVPSSRRINLSFMMKATSLSEEDSLKL GNVVTGVVEKVTPSVVVVNINGKQYLKGTIATEHMADHHGLAVLMKSVLKPGHEFDKLVVLDIEGNNVILSAKYSLINSAQELPSDISQIRPHSIVHGYI CNIIETGCFVRFLDRLTGFSPRSKGMYLSMDDSSVQLSEAFHIGQSVRSNIVEVNSETNRVTLSLKQSICASADASFLQGYFLSDDKIAKFQSTDVEGPG FQWVEEFGVGSITEGRIQESKEFGVVVSFDKYKNVLGFITNYQLGGTTIGTGSIIQAAILDVARSERLVDLTLKPELLNKFRDQSSSKKSQKKKRKSEAC KDLEVNQKVNAIVEIVKENYMASVLSLPEYNYAIGYASLSDYNSQRLPHKQIANGQSITATIVALPSPSTTGRLLLMLNSTGQVTETSSSKKAKKKASYG VGSLVQVEVNEKKPLEMRVKFGAGLRGRIHATEATNAGVIEDPFSEFRTGQTLTARIVAKSGQPNIKNGVLWELSLKAEVLADESDNISDNHEFSSGQCV GGYVYKVDSEWVWLAISRTVNAQLFILDSSSEPGELQEFQNLFGVGKLVRGYVLTYNRAKKLLRLGMHPLRPLKQIDNVAPHIHEGDVVGGRISRALPGV GGLFVQIGPHLHGKVHFTELKDEWTADPLAEYPEGQFVRCKVLEIGLSIKGTAHIDLSLRSSFDGMRGLSSVESSGNTHVEKIEDLHPNDVVQGYVKSIT AKGCFILLSRKLEAKILVSNLSDGYIEKPETEFPVGKLVVGRVLSVEPLSKRIEVTLRTTKPGNESKSQGNDLSHLRVGRIVSGSIRRVEPYGLFVTLSN SNMVGLCHISELPADQANDTLSNYKAGEKVTVKILQVDEERRRISLGMTDLDMENNDDESVEGDEEVGESDDDDTDTNITLLPERDDSESEDESKECPFP EAESRASIPPLEVTLDDMEEDQADDRVASDNQDHNVEPGTKDKKKKEKCKTRGEREKEIRAAEERLLEKDVVPETADEFEKLLRGSPNSSFIWIKYMAFL LNTSDVEKARSVAERALRTISFREEGEKLNIWVAYFNLENQYGVPREEAVNKLFTRALQFCDSKKVHMALLGMYERTEQDKSADELASKMVRKFKQSCKV WLARMRRVISQEEDKVQSVVQRALMCLPRRKHIKFITQAALLEFKSGLADRGRSMFEGVLREYPKRTDLWSIYIDQEIKHGDADMIRSLFERAITLSLAP KKMTFLFKKYLEYEKSMGDVEKIEAVKQKALDYARSELV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11964			RNA binding;RNA binding (.1)		Lus10029327 [exp]	0	1
AT3G06530			ARM repeat superfamily protein...		Lus10008676 [exp]	1.0	0.9736
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Lus10001170 [exp]	2.4	0.9649
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Lus10025091 [exp]	3.5	0.9536
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031692 [exp]	3.9	0.9592
AT3G55160			unknown protein		Lus10015366 [exp]	4.9	0.9588
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031111 [exp]	5.0	0.9566
AT4G30150			unknown protein		Lus10012174 [exp]	6.0	0.9438
AT4G04940			transducin family protein / WD...		Lus10035842 [exp]	6.5	0.9502
AT4G23540			ARM repeat superfamily protein...		Lus10035446 [exp]	6.9	0.9478
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10012873 [exp]	8.4	0.8985

Compare expression of checked genes

Lus10029327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.