Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13570 119 / 4e-33 SCL30A, At-SCL30A SC35-like splicing factor 30A (.1) AT1G55310 113 / 3e-30 ATSCL33, SR33, At-SCL33 SC35-like splicing factor 33 (.1.2.3) AT3G55460 62 / 1e-11 SCL30, At-SCL30 SC35-like splicing factor 30 (.1) AT5G18810 61 / 2e-11 SCL28, At-SCL28 SC35-like splicing factor 28 (.1) AT3G08000 43 / 3e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G13690 42 / 6e-05 ATE1 ATPase E1 (.1) AT3G10400 40 / 0.0004 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016215 [exp] 132 / 9e-39 AT1G55310 119 / 6e-34 SC35-like splicing factor 33 (.1.2.3) Lus10012932 [exp] 118 / 6e-33 AT3G13570 174 / 1e-53 SC35-like splicing factor 30A (.1) Lus10002699 [exp] 66 / 8e-13 AT3G55460 138 / 3e-39 SC35-like splicing factor 30 (.1) Lus10000953 [exp] 67 / 9e-13 AT2G39670 588 / 0.0 Radical SAM superfamily protein (.1.2) Lus10015146 [exp] 41 / 8e-05 AT3G08000 145 / 5e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10031534 [exp] 41 / 8e-05 AT3G08000 146 / 2e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032591 [exp] 41 / 0.0001 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10017923 [exp] 42 / 0.0002 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1) Lus10004641 [exp] 41 / 0.0002 AT1G13690 277 / 8e-97 ATPase E1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G062500 [exp] 113 / 3e-31 AT3G13570 167 / 9e-52 SC35-like splicing factor 30A (.1) Potri.003G218600 [exp] 111 / 4e-30 AT3G13570 177 / 7e-55 SC35-like splicing factor 30A (.1) Potri.001G006400 [exp] 110 / 6e-30 AT3G13570 170 / 3e-52 SC35-like splicing factor 30A (.1) Potri.006G197000 [exp] 108 / 2e-29 AT1G55310 187 / 8e-59 SC35-like splicing factor 33 (.1.2.3) Potri.008G056600 [exp] 76 / 1e-16 AT3G55460 134 / 6e-38 SC35-like splicing factor 30 (.1) Potri.010G203200 [exp] 74 / 6e-16 AT3G55460 144 / 1e-41 SC35-like splicing factor 30 (.1) Potri.008G196700 [exp] 66 / 4e-13 AT5G18810 168 / 8e-52 SC35-like splicing factor 28 (.1) Potri.010G026100 [exp] 65 / 1e-12 AT5G18810 172 / 2e-53 SC35-like splicing factor 28 (.1) Potri.001G319900 [exp] 41 / 0.0001 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.008G097500 [exp] 41 / 0.0002 AT1G13690 230 / 6e-78 ATPase E1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10029328 pacid=23139814 polypeptide=Lus10029328 locus=Lus10029328.g ID=Lus10029328.BGIv1.0 annot-version=v1.0 ATGAGGGGAAGGAGCTACAGTTACAGTCCATCTCCACCGAGAGGATACGGAAGGAGGGGACGAAGCCCTAGCCCGAAGGGGCGATACAGAGGTCGAAGCA GGGATCTGCCAACCAGTCTTCTTGTTCGGAACCTTCGTCATGATTGCAGGGACCCTCGTGGCTTTGGTTTTGTCCAATTTGTAGATCCTGCTGATGCTGC CGAAGCCAAGTATAATATGGATGGCGAGTTTCTTCTAGGGAGAGAGCTGACAGTTGTCTTTGCGGAGGAAAACAGGAAGAAACCCTCAGAAATGAGGGCC AGAGACCGTATTCTTGCTTTATGTTCAGGGGTAGGGACAGTATGGACCGAAGGAGGTCCCCTTCGCCAAGCTATCGACGCAGGAGGTATTCAAGGAGTCC TGAATACTATTCCCCCTCTCCTAGAAGCCGACGCTACTCAAGGTCGGTATCCCCAAGGGACAGCAAGTACAGGTCCATCTCTCCGAGGGAGAGAAGCTAC AGGCAGCGTTCGTATTCGCAGTCGAGATCTCCATATTCAGAGAGGAGCCGGAGCCCTAGTCGAAGCAGGAGCCCTAGCTATGACTAGTGTTGTCTATATC CTGAGCCTCGATGTTTCTTCCCTCTTGTAA
AA sequence Show only first row Show all	>Lus10029328 pacid=23139814 polypeptide=Lus10029328 locus=Lus10029328.g ID=Lus10029328.BGIv1.0 annot-version=v1.0 MRGRSYSYSPSPPRGYGRRGRSPSPKGRYRGRSRDLPTSLLVRNLRHDCRDPRGFGFVQFVDPADAAEAKYNMDGEFLLGRELTVVFAEENRKKPSEMRA RDRILALCSGVGTVWTEGGPLRQAIDAGGIQGVLNTIPPLLEADATQGRYPQGTASTGPSLRGREATGSVRIRSRDLHIQRGAGALVEAGALAMTSVVYI LSLDVSSLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10029328 [exp]	0	1
AT1G07350		SR45a	serine/arginine rich-like prot...		Lus10018202 [exp]	1.0	0.9006
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10029885 [exp]	6.0	0.8205
AT2G23090			Uncharacterised protein family...		Lus10014734 [exp]	8.1	0.7638
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10009389 [exp]	8.1	0.7971
					Lus10014600 [exp]	13.5	0.7617
AT2G20560			DNAJ heat shock family protein...		Lus10017687 [exp]	22.7	0.7655
AT3G53230			ATPase, AAA-type, CDC48 protei...		Lus10001402 [exp]	22.7	0.5866
AT3G03310		ATLCAT3	ARABIDOPSIS LECITHIN:CHOLESTER...		Lus10026853 [exp]	25.0	0.7611
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10038691 [exp]	26.9	0.7633
AT3G06170			Serinc-domain containing serin...		Lus10004430 [exp]	27.0	0.7565

Compare expression of checked genes

Lus10029328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.