Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15670 177 / 2e-52 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G44130 176 / 2e-51 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G80440 164 / 2e-47 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G59940 157 / 3e-44 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 73 / 6e-14 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G27420 66 / 8e-12 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G16250 64 / 3e-11 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G26930 64 / 5e-11 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G60570 62 / 2e-10 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 59 / 2e-09 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016214 [exp] 632 / 0 AT2G44130 206 / 7e-63 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017300 [exp] 369 / 7e-128 AT1G15670 203 / 9e-63 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013538 [exp] 350 / 1e-120 AT1G15670 192 / 7e-59 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10000704 [exp] 81 / 3e-16 AT4G03030 391 / 4e-131 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 76 / 6e-15 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 75 / 2e-14 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 69 / 1e-12 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037413 [exp] 66 / 2e-11 AT5G60570 589 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10036735 [exp] 66 / 2e-11 AT2G02870 570 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G196900 [exp] 404 / 2e-141 AT1G15670 211 / 7e-66 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G007000 [exp] 347 / 7e-119 AT1G15670 198 / 1e-60 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G218400 [exp] 336 / 2e-114 AT2G44130 185 / 4e-55 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G178500 [exp] 188 / 1e-56 AT1G15670 310 / 5e-104 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G178300 [exp] 188 / 1e-56 AT1G80440 362 / 2e-124 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.007G147000 [exp] 174 / 2e-50 AT3G59940 300 / 4e-98 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G000700 [exp] 159 / 1e-44 AT3G59940 283 / 2e-91 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 77 / 2e-15 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 75 / 1e-14 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G004500 [exp] 71 / 3e-13 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10029329 pacid=23139920 polypeptide=Lus10029329 locus=Lus10029329.g ID=Lus10029329.BGIv1.0 annot-version=v1.0 ATGACCAAGTTCGAGCTTTCCTCGTCGGAGCTGATCCCCGGATTACCTGAGGACATAGCCATGGAGTGTCTAATCAGACTACACTTCACATCCCACGCCG TCGCATCCCAGGTCTGCAGCCGATGGCGCCACCTCGTCCGGAGCAGAGACTTCTACCATCACCGCAAAAACACCGGCCACACGCTCAAAGCTGCATGTCT AATCCACGCGCTCTCCACCCCCGAAACGAACGACAAATCGGTCGGCCCGACGAGGTACGGGCTAACCATGTTCGATCCAGTGACCGTGTCATGGCAGCAG ATCATCGGTTCAGTACTCGATTACCCGGCGGGTCTTCCGTTGTTCTGTCAGGTGGTCAGCTCTGAGGGGAAGCTGGTGGTGATGGGCGGGTGGGACCCGG TTGACTACCATCCTGTGAGACATGTGTCGGTCTACGATTTCACCACCCGGATGTGGAGGCAGGGGAAGGCCATGCCGGAGCCCCGATCGTTCTTCGCGGC GGCGGCGCAAGGGGGCAAGGTCGTCGTCGCCGGCGGGCATGACGAGAGCAAGAACGCTCTGAGGAGCGCGTGGATATACGACGTGTACTCCGACGAGTGG GAGGATCTTCCGCCGATGAGCCAGGAGCGAGACGAGTGCGAGGCAGTGGTGATCGGGTCGGAGGTGTGGGTCGTTGGCGGGTACCGGACCGACAGACAGG GCCAATTCGAGTCGAGCGCGGAGGCGATCGACATCATCGGAGAATTGAAATGGAGGCGCGTGGAGGAAGCATGGAAAGAGGGGCGGTGTCCGAGGTCGTG CCTCGGGGTAAGGAATTTGAACGGCGGGGAGAAGGCTGCGGCGGAGGAGCTGTTCGATTGGGCAGAGATGGGCGGCGGAGAAGTGAAGGTGGGGGCTTGT GGGGTCCAGTTGGGAAGGGGAATGACACTTGTATCCGGGTCGGCTTACCAAGGGGGACCGCAGGGGTTTTATGTAGTGGAAGGGCAGGATGATAAATGGA ACAAGTTGAGCGTTCCGCCGGAGTTCGCTGGGTTTATACAATCCGGGTGCTGCGCTGAAGTGTAA
AA sequence Show only first row Show all	>Lus10029329 pacid=23139920 polypeptide=Lus10029329 locus=Lus10029329.g ID=Lus10029329.BGIv1.0 annot-version=v1.0 MTKFELSSSELIPGLPEDIAMECLIRLHFTSHAVASQVCSRWRHLVRSRDFYHHRKNTGHTLKAACLIHALSTPETNDKSVGPTRYGLTMFDPVTVSWQQ IIGSVLDYPAGLPLFCQVVSSEGKLVVMGGWDPVDYHPVRHVSVYDFTTRMWRQGKAMPEPRSFFAAAAQGGKVVVAGGHDESKNALRSAWIYDVYSDEW EDLPPMSQERDECEAVVIGSEVWVVGGYRTDRQGQFESSAEAIDIIGELKWRRVEEAWKEGRCPRSCLGVRNLNGGEKAAAEELFDWAEMGGGEVKVGAC GVQLGRGMTLVSGSAYQGGPQGFYVVEGQDDKWNKLSVPPEFAGFIQSGCCAEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15670			Galactose oxidase/kelch repeat...		Lus10029329 [exp]	0	1
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10026061 [exp]	8.4	0.7093
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Lus10037817 [exp]	15.3	0.7072
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10037728 [exp]	17.1	0.6618
					Lus10003592 [exp]	20.4	0.6752
AT5G49350			Glycine-rich protein family (....		Lus10037727 [exp]	23.7	0.6630
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10036617 [exp]	31.6	0.6618
AT4G17250			unknown protein		Lus10000731 [exp]	42.5	0.6540
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10005927 [exp]	56.2	0.6368
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10028217 [exp]	77.2	0.5609
AT1G15060			Uncharacterised conserved prot...		Lus10013496 [exp]	80.6	0.6108

Compare expression of checked genes

Lus10029329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.