Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48900 761 / 0 Signal recognition particle, SRP54 subunit protein (.1.2) AT5G49500 669 / 0 Signal recognition particle, SRP54 subunit protein (.1) AT1G15310 660 / 0 SRP54-1, ATHSRP54A signal recognition particle 54 kDa subunit (.1) AT5G03940 177 / 2e-49 SRP54CP, CPSRP54, FFC SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) AT5G66970 135 / 9e-38 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G45770 120 / 3e-30 FRD4, CPFTSY FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) AT4G30600 102 / 6e-23 signal recognition particle receptor alpha subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016213 [exp] 686 / 0 AT1G48900 890 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Lus10021346 [exp] 178 / 2e-49 AT5G03940 903 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Lus10017023 [exp] 177 / 3e-49 AT5G03940 892 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Lus10041358 [exp] 117 / 8e-29 AT2G45770 583 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Lus10036570 [exp] 98 / 9e-22 AT2G45770 564 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Lus10017891 [exp] 97 / 2e-21 AT4G30600 933 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Lus10035066 [exp] 97 / 3e-21 AT4G30600 943 / 0.0 signal recognition particle receptor alpha subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G112800 [exp] 805 / 0 AT1G48900 887 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Potri.001G253500 [exp] 791 / 0 AT1G48900 882 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Potri.009G047902 [exp] 256 / 1e-80 AT1G48900 487 / 7e-171 Signal recognition particle, SRP54 subunit protein (.1.2) Potri.016G078600 [exp] 182 / 6e-51 AT5G03940 928 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Potri.006G211500 [exp] 175 / 2e-48 AT5G03940 859 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Potri.014G078800 [exp] 118 / 2e-29 AT2G45770 593 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Potri.018G105900 [exp] 96 / 5e-21 AT4G30600 856 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Potri.006G183600 [exp] 94 / 2e-20 AT4G30600 869 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Potri.002G155400 [exp] 62 / 3e-11 AT2G45770 215 / 1e-69 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00448 [flax] [poplar] SRP54 SRP54-type protein, GTPase domain CL0123 [flax] [poplar] HTH PF02978 [flax] [poplar] SRP_SPB Signal peptide binding domain CL0123 [flax] [poplar] PF02881 [flax] [poplar] SRP54_N SRP54-type protein, helical bundle domain
Representative CDS sequence Show only first row Show all	>Lus10029330 pacid=23139956 polypeptide=Lus10029330 locus=Lus10029330.g ID=Lus10029330.BGIv1.0 annot-version=v1.0 ATGGTGTTGGCACAGTTAGGAGGGAGTATCTCCCGGGCAATACAGCAGATGAGCAATGCCACGGTCATTGATGAGAAGGCGTTGAACGAGTGTCTCAATG AGATTACCCGTGCTCTGCTGCAAGCTGATGTGCAGTTCAAGCTCGTCAGGGAAATGCAGAACAATATCAAGACCATTGTCAATCTTAGTGATCTTGCTGC TGGTCACAATAAGCGGAAGATCATCCAACAGGCAATATTCAATGAGCTCTGCAAAATGTTGGATCCTGGGAAGCCTTCTTTCACGCCAAAAAAAGGGAAA CCAAGCGTTGTTATGTTTGTTGGGTTACAAGGTTCTGGGAAAACCACAACATGTACAAAATATGCGTATTATCATCAGAAAAAGGGTTGGAAACCTGCTT TAGTTTGTGCTGATACATTCAGAGCTGGTGCTTTCGATCAGCTCAAGCAGAATGCGACCAAAGCTAAGATCCCATTTTATGGAAGCTACATGGAATCAGA TCCCGTAAGAATTGCTGCAGAAGGTGTAGAAAGGTTCAAGAATGAGAATTGTGATTTGATAATAGTTGACACTAGTGGGCGTCATAAACAGGAAGCTTCT CTTTTCGAAGAAATGCGCCAAGTTGCTGAAGCCACGAAACCAGATCTCGTCATATTTGTCATGGATAGTAGCATAGGTCAAGCTGCATTTGATCAAGCTC AAGCATTTAAGCAAAGTGTTTCTGTTGGAGCTGTGATTGTTACGAAAATGGACGGTCATGCCAAGGGTGGTGGTGCTCTTAGTGCTGTTGCTGCAACAAA GAGCCCTGTCATATTCATAGGAACGGGAGAGCACATGGACGAATTTGAAGTATTTGATGTTAAGCCGTTTGTCAGCCGTCTTTTAGGCATGGGTGACTTG TCCGGATTCATGGATAAGATACAAGAGGTTGTTCCTATGGATCAACAACCTGAACTTCTGCAGATGCTCCAAGACGGTACATTTACTTTAAGGATTATGT ATGAGCAGTTTCAGAACCTTCTCAAAATGGGTCCTATTGGCCAGTTTCCTTTTCCAGAGCTGGACAGCACGAATCCGAAACTGATGAACGAGTCCCGAAT GATGAGAATCGCAAGGGGATCAGGACGTCCAATCAGAGACGTGATGGAGATGCTGGACGAGTACAAGCGGCTGGCAAAAGTATGGAGCAAAATGAAGGGG CTGAAGATCCCGAAGAAGGGCGACATGAGCGCCTTGTCGAGAAACATGAACGCTCAGCAGATGAGCAAAGCTCTTCCTCCGCAGATGTTGAAGCAGATTG GCGGCATGGGCGGGTTGCAGAGTTTAATGAAGCAGATGGGCTCCGGTGGCATGGGCAAGGACATGATGGGAATGTTCGGCGGCGGAGGCGACAGTTAA
AA sequence Show only first row Show all	>Lus10029330 pacid=23139956 polypeptide=Lus10029330 locus=Lus10029330.g ID=Lus10029330.BGIv1.0 annot-version=v1.0 MVLAQLGGSISRAIQQMSNATVIDEKALNECLNEITRALLQADVQFKLVREMQNNIKTIVNLSDLAAGHNKRKIIQQAIFNELCKMLDPGKPSFTPKKGK PSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVRIAAEGVERFKNENCDLIIVDTSGRHKQEAS LFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDL SGFMDKIQEVVPMDQQPELLQMLQDGTFTLRIMYEQFQNLLKMGPIGQFPFPELDSTNPKLMNESRMMRIARGSGRPIRDVMEMLDEYKRLAKVWSKMKG LKIPKKGDMSALSRNMNAQQMSKALPPQMLKQIGGMGGLQSLMKQMGSGGMGKDMMGMFGGGGDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48900			Signal recognition particle, S...		Lus10029330 [exp]	0	1
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Lus10017584 [exp]	8.5	0.7056
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10028937 [exp]	20.5	0.7022
AT1G63610			unknown protein		Lus10013233 [exp]	29.3	0.6540
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10027094 [exp]	31.0	0.6770
AT4G17420			Tryptophan RNA-binding attenua...		Lus10007800 [exp]	31.7	0.6569
AT3G25545			unknown protein		Lus10029095 [exp]	61.9	0.6275
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Lus10012186 [exp]	63.2	0.6358
AT3G10330			Cyclin-like family protein (.1...		Lus10035440 [exp]	63.4	0.6570
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10023053 [exp]	77.4	0.6123
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10008341 [exp]	81.2	0.6377

Compare expression of checked genes

Lus10029330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.