Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11980 724 / 0 FAR2, MS2 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) AT3G56700 392 / 1e-129 AtFAR6, FAR6 fatty acid reductase 6 (.1) AT3G44540 358 / 5e-117 FAR4 fatty acid reductase 4 (.1.2) AT4G33790 354 / 2e-115 G7, FAR3, CER4 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) AT5G22500 353 / 3e-115 FAR1 fatty acid reductase 1 (.1) AT3G44550 351 / 3e-114 FAR5 fatty acid reductase 5 (.1) AT3G44560 340 / 7e-110 FAR8 fatty acid reductase 8 (.1) AT5G22420 252 / 3e-77 FAR7 fatty acid reductase 7 (.1) AT3G60060 47 / 5e-06 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016208 [exp] 1115 / 0 AT3G11980 749 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10015974 [exp] 881 / 0 AT3G11980 735 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10000851 [exp] 419 / 2e-139 AT3G11980 459 / 2e-155 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10006264 [exp] 361 / 5e-118 AT4G33790 624 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10020584 [exp] 359 / 2e-117 AT4G33790 627 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10036824 [exp] 293 / 6e-92 AT3G44540 461 / 6e-159 fatty acid reductase 4 (.1.2) Lus10019187 [exp] 292 / 3e-91 AT3G44540 444 / 4e-152 fatty acid reductase 4 (.1.2) Lus10000852 [exp] 213 / 8e-63 AT3G11980 181 / 9e-52 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10036821 [exp] 87 / 2e-19 AT3G44540 143 / 5e-41 fatty acid reductase 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G062200 [exp] 840 / 0 AT3G11980 754 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.006G196500 [exp] 772 / 0 AT3G11980 699 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.016G031600 [exp] 509 / 5e-176 AT3G11980 503 / 9e-174 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.004G185000 [exp] 365 / 6e-120 AT4G33790 588 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.004G185100 [exp] 365 / 1e-119 AT4G33790 594 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.009G144900 [exp] 357 / 2e-116 AT4G33790 618 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.009G145000 [exp] 354 / 1e-115 AT4G33790 578 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.019G075201 [exp] 349 / 1e-113 AT3G44540 515 / 1e-180 fatty acid reductase 4 (.1.2) Potri.009G145100 [exp] 62 / 9e-12 AT3G44540 79 / 1e-18 fatty acid reductase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07993 [flax] [poplar] NAD_binding_4 Male sterility protein CL0063 [flax] [poplar] PF03015 [flax] [poplar] Sterile Male sterility protein
Representative CDS sequence Show only first row Show all	>Lus10029336 pacid=23139985 polypeptide=Lus10029336 locus=Lus10029336.g ID=Lus10029336.BGIv1.0 annot-version=v1.0 ATGGGGACTTTCTCCCTCCATTGTCCTCCTCCTCCTCCACCTCCTCCTCCTTCACTTCTTGTACAAAAAAATAAAGCTGTCAAGATATCTGCTGGCGGCC ATTGTTGGACTACGAGGAGGAGGAAAAGTCTTCTTACCTCATCATCTTCTAGTGTTGTGTTCTGTCAAAGTGGAGGAAACACAATCAGGTGTGGAGTTGG TGGTGGAGGTGGAGGAAGTGTTTCTTCAGTTTTTGGTGGGAGAACATCAGCATTGGTGACTCCAACTACTACTGATCAGGAGCAACAAAGCTCAGCAGCT GTGGTGATGGATGCTGCTAGCAGCTTGGTTTTGTCCCCAAATGGTAAAGGACAGCCTGAGATTGCTGTGAAGGATTTAATCCCTCCTTATGGTGAACCAA CAAGTTCTAGTCAGGACGGTATCGGCATTGTCAGATTTCTAAGAGGGAAAGGGTTCTTCATTACTGGTGCAACCGGGTTCCTCGCCAAAGTTCTGATTGA GAAGATACTGAGGACAATGCCTGATATTGGGAAGATATATTTGTTGATCAAGGCCAAGAACAAGGATGCTGCAATGTCAAGATTGAAAACTGAAATACTA AATGCAGAACTGTTCACGTCTCTCCGGCAAACCTATGGAAAATCCTACCACACTTTCATGTTGAGCAAACTAGTCCCTGTAGCCGGAGATGTCTGCAAAT CGAATCTCGGGTTGGAACAAGAAATAGCAGATTTGATTGCTGATGATGTTGATGTGATTGTGAATTCAGCTGCCAATACAACTTTCGACGAAAGATATGA TGTGGCCATTGACATTAATACAAGGGGACCTTCCAACCTGATGGGTTTCGCCAAGAAGTGCGAAAAGCTGAAGCTCTTCTTACAAGTATCAACCGCATAT GTTAACGGGCAAAGGCAAGGAAGAATCATGGAGAGGGCATTCGGAATGGGGGACTGCATAGCCGAGGAGAACAGTAATCCTGCATCGAGATTCACGTTGG ACATTGAGGGCGAAGTGAAGCTGGTTCTGGATTCCAAGGAAGCATTTCACCCTGACGAAATCGCAACCAAGATGAGGGAACTTGGATTAGAAAGGGCAAG GAAATACGGCTGGCAAGATACCTATGTATTCACAAAGGCCATGGGAGAAATGGTGATCGATAATATGAGAGGCGAGTTTCCTGTTTTCTTTCTCAGACCG AGTGTGATTGAGAGCACTTACAAAGAACCTTTCCCTGGATGGATGGAAGGCAACAGGATGATGGATCCAATAGTTTTGTACTACGGGAAAGGGCAGCTCA CTGGATTTTTGGTGGATCCAAATGGTGTTCTTGACGTGGTCCCAGCAGATATGGTGGTGAATGCAACATTGGCAGCAATGGCCAGGCACGGAATGGATCA GAAACCAGAGATAAACGTCTACCAAATAGCCTCTTCAGTAGTGAACCCACTCATCTTCAAGGACCTAGCTACACTGCTCTACGAACACTACAACACATCT CCATACATGGACTCGAACGGCTTCCCAATCACCGTGCCACTGATGAAACTCTTCAGCTCCATGGATGAATTCTCGGACCACCTGTGGAAAGATGTGGTCC AGAGGAATGGGTTGACAGCAGCAGTCGCCTCATCAGACGGGAAACTGTCCCAGAAGCACGAGTTCATCTGTCGAAAATCAGTCGAGCAGGCCAAGTACCT CGCGAACATATACGAACCCTACACTTTCTACGGTGGAAGATTTGACAACAGCAACGGGGAGGGACTGATGGAGATGATGTCTGAGGTCGAGAAGAGGAAG TTCGGGTTCGATGTTGGGAGTATAGACTGGAGAGATTACATCACTAATGTTCATATCCCTGGGTTGAGGAGGCATGTCATGAAGGGAAGAGGAACAAGCA GCAGCAGCAGCTGA
AA sequence Show only first row Show all	>Lus10029336 pacid=23139985 polypeptide=Lus10029336 locus=Lus10029336.g ID=Lus10029336.BGIv1.0 annot-version=v1.0 MGTFSLHCPPPPPPPPPSLLVQKNKAVKISAGGHCWTTRRRKSLLTSSSSSVVFCQSGGNTIRCGVGGGGGGSVSSVFGGRTSALVTPTTTDQEQQSSAA VVMDAASSLVLSPNGKGQPEIAVKDLIPPYGEPTSSSQDGIGIVRFLRGKGFFITGATGFLAKVLIEKILRTMPDIGKIYLLIKAKNKDAAMSRLKTEIL NAELFTSLRQTYGKSYHTFMLSKLVPVAGDVCKSNLGLEQEIADLIADDVDVIVNSAANTTFDERYDVAIDINTRGPSNLMGFAKKCEKLKLFLQVSTAY VNGQRQGRIMERAFGMGDCIAEENSNPASRFTLDIEGEVKLVLDSKEAFHPDEIATKMRELGLERARKYGWQDTYVFTKAMGEMVIDNMRGEFPVFFLRP SVIESTYKEPFPGWMEGNRMMDPIVLYYGKGQLTGFLVDPNGVLDVVPADMVVNATLAAMARHGMDQKPEINVYQIASSVVNPLIFKDLATLLYEHYNTS PYMDSNGFPITVPLMKLFSSMDEFSDHLWKDVVQRNGLTAAVASSDGKLSQKHEFICRKSVEQAKYLANIYEPYTFYGGRFDNSNGEGLMEMMSEVEKRK FGFDVGSIDWRDYITNVHIPGLRRHVMKGRGTSSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10029336 [exp]	0	1
AT4G03090			sequence-specific DNA binding;...		Lus10024746 [exp]	1.4	0.8866
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10000830 [exp]	5.0	0.8259
AT4G32790			Exostosin family protein (.1)		Lus10043238 [exp]	6.2	0.8289
AT5G40600		EMB1875	unknown protein		Lus10003647 [exp]	6.5	0.8318
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Lus10042983 [exp]	9.5	0.7727
AT2G34930			disease resistance family prot...		Lus10016337 [exp]	9.7	0.7603
					Lus10042808 [exp]	9.8	0.7741
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013076 [exp]	10.5	0.7828
AT1G09730			Cysteine proteinases superfami...		Lus10000917 [exp]	10.7	0.8070
AT3G25840			Protein kinase superfamily pro...		Lus10035032 [exp]	10.8	0.8278

Compare expression of checked genes

Lus10029336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.