Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42520 680 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58570 655 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 650 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT5G63120 293 / 7e-93 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G55150 287 / 2e-91 DEA(D/H)-box RNA helicase family protein (.1) AT3G01540 281 / 8e-88 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G14610 280 / 4e-87 DEAD box RNA helicase family protein (.1.2) AT2G33730 276 / 7e-85 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G06480 273 / 1e-81 DEAD box RNA helicase family protein (.1) AT2G47330 266 / 9e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016207 [exp] 874 / 0 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015976 [exp] 765 / 0 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000849 [exp] 724 / 0 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015977 [exp] 657 / 0 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000848 [exp] 572 / 0 AT2G42520 655 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030075 [exp] 513 / 1e-178 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015978 [exp] 449 / 3e-156 AT3G58570 535 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10001074 [exp] 448 / 4e-155 AT3G58570 533 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015627 [exp] 285 / 2e-90 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G217800 [exp] 675 / 0 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G061900 [exp] 662 / 0 AT2G42520 786 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G007900 [exp] 655 / 0 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G038300 [exp] 283 / 1e-89 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 284 / 4e-89 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.019G130900 [exp] 279 / 1e-87 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.012G084600 [exp] 280 / 2e-87 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G071400 [exp] 283 / 4e-87 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.015G037200 [exp] 280 / 1e-86 AT2G33730 1058 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G158000 [exp] 276 / 2e-86 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10029337 pacid=23139860 polypeptide=Lus10029337 locus=Lus10029337.g ID=Lus10029337.BGIv1.0 annot-version=v1.0 ATGACAACTAGATGGGCTGATTCTGTGGCTAACTCCGCTACTGACAATGCTGGTGGGCGTTCTGCACGCCCTGCCTATGTTCCACCCCACCTCCGCAATA AACCACCCTCGGCTGATGCTGCTGCTAAATCCACTGCGGCCCCGACTATTGACCGCCCTAGTTATGGTGGACCACCTGGTGGTTCCCGCTGGAATGGTGC TCCCAGAGCAGATACAGAGAGAATGGGGCGGAATTATGGTGGTTGGAACAATAATACAGGAGGATGGGACCGTGGTAGAGGCCGTGAGGTGAACCCGTTT GGTGAAGAAGATGTGGAGTGTGAACCTAGCGGGCAGGAGAGCACTGGAATTAACTTTGATGCATATGAAGATATACCTGTGGAGGCAAGTGGGAGCAATA TACCTCCTCCTGTAAATACCTTTGCGGAGATAGACCTGGGCGAGGCAGTAAATCAGAACATACGAAGATGCAAGTATGTTAAGCCAACTCCGGTTCAGCG TAATGCAATCCCCATATTGATTGCTGGACGTGACTTGATGGCCTGTGCTCAGACAGGTTCAGGAAAGACTGCTGCGTTTTGCTTTCCTATAATTAGTGGA ATAATTCGAGACAATATGGTGCAGAGGCAACGTGCTCCAAGAACAGCATACCCGCTTGCTCTTATTCTTTCACCTACAAGAGAACTAGCTTCTCAGATAC ACGATGAAGCCAAGAAATTTGCTTATCAAAGTGGTGTAAGAGTCGTTGTTGCTTATGGTGGAGCTCCAATTCAACAACAGTTGCGAGAACTGGAAAGGGG AGTTGACATTCTTGTTGCCACTCCTGGACGATTGGTGGACTTGCTTGAGAGGGCCAGGGTGTCCCTGCAAATGATTAGATACTTGGCACTTGATGAAGCT GATAGGATGTTGGATATGGGGTTCGAGCCTCAGATCAGAAAGATTGTTGAACAAGTAGACATGCCCCCTTCTGGGATGAGACAAACAATGCTTTTCAGCG CCACTTTTCCAAAAGAAATACAGAGACTTGCATCAGACTTTCTCTCAAACTACATATTCTTGGCTGTGGGAAGGGTTGGGTCCAGCACTGATTTGATTCT TCAAAGGGTTGAATTTGTTCAAAATGCTGATAAGAGAAGCCATCTCATGGACCTTCTTCATGCACAAAAAGAAAGTGAAGTCAATGGCAAGGAATCGTTG ACATTAGTGTTTGTTGAGACTAAGAAGGGAGCTGATTCTCTGGAGTACTGGTTGTGTGGCAACGGTTTCCCTGCTACAACAATCCATGGCGATAGAACTC AACAGGAACGAGAACTCGCACTGAGATCATTCAAGAGCGGGAGGACGCCGATCCTAGTCGCAACCGACGTAGCAGCTCGTGGCCTCGACATCCCCCACGT GGCCCACGTCATCCATTTCGACCTTCCCAACGAAACCGGCAGCCAGCTGTAA
AA sequence Show only first row Show all	>Lus10029337 pacid=23139860 polypeptide=Lus10029337 locus=Lus10029337.g ID=Lus10029337.BGIv1.0 annot-version=v1.0 MTTRWADSVANSATDNAGGRSARPAYVPPHLRNKPPSADAAAKSTAAPTIDRPSYGGPPGGSRWNGAPRADTERMGRNYGGWNNNTGGWDRGRGREVNPF GEEDVECEPSGQESTGINFDAYEDIPVEASGSNIPPPVNTFAEIDLGEAVNQNIRRCKYVKPTPVQRNAIPILIAGRDLMACAQTGSGKTAAFCFPIISG IIRDNMVQRQRAPRTAYPLALILSPTRELASQIHDEAKKFAYQSGVRVVVAYGGAPIQQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEA DRMLDMGFEPQIRKIVEQVDMPPSGMRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLILQRVEFVQNADKRSHLMDLLHAQKESEVNGKESL TLVFVETKKGADSLEYWLCGNGFPATTIHGDRTQQERELALRSFKSGRTPILVATDVAARGLDIPHVAHVIHFDLPNETGSQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42520			P-loop containing nucleoside t...		Lus10029337 [exp]	0	1
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Lus10031492 [exp]	1.4	0.9365
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007887 [exp]	1.7	0.9374
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Lus10042110 [exp]	2.8	0.9292
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10027491 [exp]	4.9	0.9112
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10015205 [exp]	6.2	0.9314
AT5G54920			unknown protein		Lus10016477 [exp]	7.7	0.9054
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10012697 [exp]	7.7	0.9224
AT3G16480		MPPALPHA	mitochondrial processing pepti...		Lus10012926 [exp]	11.7	0.9148
AT1G79920		AtHsp70-15	heat shock protein 70-15, Heat...		Lus10037531 [exp]	11.8	0.8865
AT4G08960			phosphotyrosyl phosphatase act...		Lus10011297 [exp]	12.6	0.9126

Compare expression of checked genes

Lus10029337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.