Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58560 867 / 0 DNAse I-like superfamily protein (.1) AT3G58580 845 / 0 DNAse I-like superfamily protein (.1) AT3G18500 133 / 2e-33 DNAse I-like superfamily protein (.1.2.3) AT1G31500 112 / 5e-27 DNAse I-like superfamily protein (.1.2.3.4) AT5G11350 113 / 7e-26 DNAse I-like superfamily protein (.1) AT1G73875 102 / 5e-23 DNAse I-like superfamily protein (.1) AT5G54130 49 / 5e-06 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) AT1G31530 49 / 5e-06 DNAse I-like superfamily protein (.1) AT1G02270 49 / 7e-06 Calcium-binding endonuclease/exonuclease/phosphatase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016206 [exp] 1066 / 0 AT3G58560 944 / 0.0 DNAse I-like superfamily protein (.1) Lus10012293 [exp] 974 / 0 AT3G58560 949 / 0.0 DNAse I-like superfamily protein (.1) Lus10015981 [exp] 887 / 0 AT3G58580 872 / 0.0 DNAse I-like superfamily protein (.1) Lus10036357 [exp] 122 / 2e-29 AT3G18500 422 / 2e-145 DNAse I-like superfamily protein (.1.2.3) Lus10014775 [exp] 118 / 4e-28 AT3G18500 423 / 7e-146 DNAse I-like superfamily protein (.1.2.3) Lus10026203 [exp] 108 / 2e-25 AT1G31500 458 / 2e-162 DNAse I-like superfamily protein (.1.2.3.4) Lus10013119 [exp] 106 / 1e-23 AT5G11350 536 / 0.0 DNAse I-like superfamily protein (.1) Lus10008086 [exp] 102 / 2e-22 AT5G11350 526 / 9e-178 DNAse I-like superfamily protein (.1) Lus10032490 [exp] 100 / 3e-22 AT1G73875 446 / 3e-154 DNAse I-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G061700 [exp] 962 / 0 AT3G58560 926 / 0.0 DNAse I-like superfamily protein (.1) Potri.006G195600 [exp] 957 / 0 AT3G58560 904 / 0.0 DNAse I-like superfamily protein (.1) Potri.003G106000 [exp] 106 / 1e-24 AT1G31500 457 / 1e-160 DNAse I-like superfamily protein (.1.2.3.4) Potri.018G032300 [exp] 107 / 6e-24 AT5G11350 560 / 0.0 DNAse I-like superfamily protein (.1) Potri.012G057100 [exp] 105 / 7e-24 AT1G73875 502 / 2e-176 DNAse I-like superfamily protein (.1) Potri.014G108200 [exp] 52 / 7e-07 AT5G54130 620 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.015G004200 [exp] 50 / 2e-06 AT5G54130 719 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.012G007600 [exp] 49 / 5e-06 AT5G54130 721 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.002G182500 [exp] 47 / 3e-05 AT5G54130 600 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10029338 pacid=23139808 polypeptide=Lus10029338 locus=Lus10029338.g ID=Lus10029338.BGIv1.0 annot-version=v1.0 ATGCTGTGCGTGCTGCGTGTGCACCTTCCTTCGGATATCCCTATTGTAGGCTGCGAGTTAACGCCTTACGTCCTCTTACGGCGAGCTGACAAGTCTCTCG TCTCCGAAGATGTCCCCGAGTCTTCCCCTCTCGATGGCCATTTCTTGAGATATAAATGGTACCGTATACAAAGTGATAAGAAGGTAGCTGTATGTAGTAT ACATCCATCAGAACAAGCCACATTACAGTGCATAGGCTGTGTCAAGGCAAAGATACCAGTAGCTAAAAGTTACCATTGCTCTCCGAAATGCTTCTCTGAT GCGTGGCAGCACCACCGCGCTCTTCATGAACGTGCAGCAAGTGCTGTGAATGAGAATGGGAACGAGGAAGAAGAGCTTTTCGGGCGTCTCAATAGTGCAG GATCTGGTGTTAGTAGTTCAAGTTTAACTAGTTCTGCATCAACTGCAAGCTTGGCGAATGGATCAACTTCTTTGTATCCTGCAGCAGTGACGCGAGGTGG TGAGACCTGGTTTGAAGTCGGGCGGTTGAAAACATATACACCGTCGGCTGATGATATTGGCCATGTTCTTAAGTTCGAGTGTGTTGTGGTCGATGCTGAA ACCAAACAAACTGTTGGGCATCCCAACACGTTAACGACTTCCCGTGTTATTCCAGCCCCCTCGCCTCCCCCGCGGCGGCTGGTCCCTGTCAGTGGGGTTG ATGTCAATAGTCATTTAGATGCTGATGGTCGTATTTCATCATCTGGAACTTTCACTGTGCTCTCATATAACGTCTTGGCTGATGTCTATGCTACAAGTGA GTCTTACGCTTATTGCCCATCATGGGCTCTTTCATGGGCCTATCGACGGCAGAACTTGCTGCGGGAAATAGTTGGATATCGGGCAGATATTGTTTGTCTC CAGGAGGTTCAAAATGATCATTTTGAGGAGTTCTTCGCTCCAGAGTTGGACAAACATGGTTACCAAGCCTTGTACAAGCGGAAGACAAATGAAGTGTACA ATGGAACTCCAAATATCATTGACGGTTGTGCAACTTTCTTTCGTAGAGACAGATTTTCACACGTAAAGAAATATGAGGTTGAATTCAACAAGGCTGCTCA GTCTTTGACGGAAGCTTTGGTTCCAAGTGCTCAGAGAAAAACTGCACTGAACCGATTGGTCAAGGATAATGTTGCACTAATTGTGGTATTGGAGGCGAAG TTCAGCAATCAAGGAGCTGATACTCCTGGGAAGCGGCAGCTTCTATGTGTTGCAAACACCCATGTAAATGTCCATCAAGACCTAAAGGATGTTAAGCTTT GGCAGGTTCTTACTCTTCTTAAGGGATTAGAGAAAATAGCTGCTAGCGCTGACATTCCTATGATAGTTTGCGGAGATTTCAACTCACTACCTGGAAGTGC TCCTCATGCACTTCTAGCAATGGGAAAGGTGGATCCTTTACATCCCGATATAGTTGTAGACCCTCTCAGTATATTGCGTCCTCACAGCAAGCTAACACAT CAGCTACCACTGGTTAGTGCTTACTCATCGTTTGCGAGACTGGGAGTTGGTCTTGGTCAGCAGCAGAGGAGGAAACTTGATCCGGCCACGAACGAGCCAT TGTTTACAAACTGCACTAGGGATTTTATTGGCACTCTTGATTACATATTTTACACCGCCGACTCATTAACGGTAGAGGCCTTGTTGGAACTCTTGGATGA GGAAAGTTTGAGGAAAGACACAGCTCTTCCTTCTCCAGAGTGGTCATCCGATCATACTGCACTATTAGCCGAATTTCGTTGCAAGCCTAGACAAAGACGA TGA
AA sequence Show only first row Show all	>Lus10029338 pacid=23139808 polypeptide=Lus10029338 locus=Lus10029338.g ID=Lus10029338.BGIv1.0 annot-version=v1.0 MLCVLRVHLPSDIPIVGCELTPYVLLRRADKSLVSEDVPESSPLDGHFLRYKWYRIQSDKKVAVCSIHPSEQATLQCIGCVKAKIPVAKSYHCSPKCFSD AWQHHRALHERAASAVNENGNEEEELFGRLNSAGSGVSSSSLTSSASTASLANGSTSLYPAAVTRGGETWFEVGRLKTYTPSADDIGHVLKFECVVVDAE TKQTVGHPNTLTTSRVIPAPSPPPRRLVPVSGVDVNSHLDADGRISSSGTFTVLSYNVLADVYATSESYAYCPSWALSWAYRRQNLLREIVGYRADIVCL QEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGTPNIIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTEALVPSAQRKTALNRLVKDNVALIVVLEAK FSNQGADTPGKRQLLCVANTHVNVHQDLKDVKLWQVLTLLKGLEKIAASADIPMIVCGDFNSLPGSAPHALLAMGKVDPLHPDIVVDPLSILRPHSKLTH QLPLVSAYSSFARLGVGLGQQQRRKLDPATNEPLFTNCTRDFIGTLDYIFYTADSLTVEALLELLDEESLRKDTALPSPEWSSDHTALLAEFRCKPRQRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58560			DNAse I-like superfamily prote...		Lus10029338 [exp]	0	1
					Lus10021411 [exp]	2.4	0.9048
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10011054 [exp]	3.2	0.9155
AT1G80680		NUP96, SAR3, MO...	PRECOCIOUS, MODIFIER OF SNC1,3...		Lus10007993 [exp]	4.0	0.8961
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10021265 [exp]	8.1	0.9045
AT3G13290		VCR	varicose-related (.1)		Lus10039116 [exp]	9.5	0.8776
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Lus10005032 [exp]	10.2	0.8862
AT3G48060			BAH domain ;TFIIS helical bund...		Lus10033410 [exp]	11.7	0.8873
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10003024 [exp]	12.4	0.8955
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10015446 [exp]	13.3	0.8829
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10042409 [exp]	17.1	0.8596

Compare expression of checked genes

Lus10029338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.