Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41010 48 / 2e-06 ATCAMBP25 calmodulin (CAM)-binding protein of 25 kDa (.1) AT3G56880 48 / 3e-06 VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016205 [exp] 251 / 2e-82 AT2G41010 99 / 5e-25 calmodulin (CAM)-binding protein of 25 kDa (.1) Lus10012292 [exp] 113 / 8e-30 AT3G56880 125 / 1e-35 VQ motif-containing protein (.1) Lus10015982 [exp] 112 / 7e-29 AT3G56880 135 / 5e-39 VQ motif-containing protein (.1) Lus10001374 [exp] 61 / 2e-11 AT5G42965 47 / 1e-07 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G029600 [exp] 79 / 1e-16 AT3G56880 125 / 4e-35 VQ motif-containing protein (.1) Potri.006G032300 [exp] 74 / 4e-15 AT3G56880 127 / 1e-35 VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10029339 pacid=23139925 polypeptide=Lus10029339 locus=Lus10029339.g ID=Lus10029339.BGIv1.0 annot-version=v1.0 ATGGGTTCTTCTTTCGACGCCTGGACATTCCGTCCGGCGTTTTCCGACTCATGGATCTCCGAAACCCACGCTCAAGAATCCGAAGCTTTGACCAAAGCCC TCCAGCAAACCCTTTTTTCTAGCTCCGATAACAATGCATTCAGTCCGTTCCTTCCTTCCGATTTCGATTTCGATTTCGCTGCTCCTACCAGCAATCCGGA TACTCCGACTACGATTCCTTCCTCTTCCGACCCGGATTCCACCCCTGCCCCGACTCCCAAGCCACGTAATGGAAACGCCGCCGCCGCCACGGTTCCGGGG GCTACAGGGAAGGTCACCAAGCGGAAGAAGAAACCACGCGCCGCCTCTAAGAAGTCGAAGACCACCTTCATCGTCGTGGATCCGGCTAACTTCCGGAAGA TGGTCCAGCAGGTCACCGGTTATGTGTCCGTGGTACCGGCTCTGAAGCCGGAGCCGCATAGGTTCGGTGGCGGTGGGAGGACGAATTACTTGTTCCACCA GACGGCGGCTGAGGAGCTGGCAGCAGCAAGAGGAGGCGCGTGCTTGCCGACGCTCGACACGTCGGCTTTGTTTCTAGACCTTATTGATCAGAAACCGACC CATGAGCAGGAGATTCGACAGAAGGCTACGTTATCCGTCACGTCTGGCGGCGGAGACGCAGTGGGTCCGCTGTCATTTCAGCACGCGCCGGTGGGTGGCG GTGGGGTAGATTTCGACAGTTTTTCGAGTTTTCCAACTCTCGAGTCCTGGGAAGTGTTAGTAGAATCGGACTCTTTGAATGCCGTCGAGTTTGTCAACGG TGGAACCAGCTCCTCACACCCTTATCTCGCAATTGTGCTTGAGATTAAACGATTTCTTCTTGCGACAAGCTGCTACAAGCTATCACATATCTTTCGCGAA ACTAACAGGCCTAAGATGGGTCATGACCAAAATGAGATGATTGAGATACTCTTCCCCACTCCCCCTCAAAAGGTGGCTATGTTGTTGGAAGAGAAAAAGA GCTGGACTGATGAGGGCTTTTAG
AA sequence Show only first row Show all	>Lus10029339 pacid=23139925 polypeptide=Lus10029339 locus=Lus10029339.g ID=Lus10029339.BGIv1.0 annot-version=v1.0 MGSSFDAWTFRPAFSDSWISETHAQESEALTKALQQTLFSSSDNNAFSPFLPSDFDFDFAAPTSNPDTPTTIPSSSDPDSTPAPTPKPRNGNAAAATVPG ATGKVTKRKKKPRAASKKSKTTFIVVDPANFRKMVQQVTGYVSVVPALKPEPHRFGGGGRTNYLFHQTAAEELAAARGGACLPTLDTSALFLDLIDQKPT HEQEIRQKATLSVTSGGGDAVGPLSFQHAPVGGGGVDFDSFSSFPTLESWEVLVESDSLNAVEFVNGGTSSSHPYLAIVLEIKRFLLATSCYKLSHIFRE TNRPKMGHDQNEMIEILFPTPPQKVAMLLEEKKSWTDEGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41010		ATCAMBP25	calmodulin (CAM)-binding prote...		Lus10029339 [exp]	0	1
AT5G21960	AP2_ERF		Integrase-type DNA-binding sup...		Lus10038082 [exp]	1.0	0.9619
AT5G47390	MYB		myb-like transcription factor ...		Lus10004384 [exp]	3.5	0.9421
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10034180 [exp]	3.7	0.9569
AT5G47390	MYB		myb-like transcription factor ...		Lus10040181 [exp]	5.5	0.9297
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10035366 [exp]	6.2	0.9243
					Lus10034192 [exp]	6.7	0.9388
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10024075 [exp]	7.2	0.9131
AT5G18150			Methyltransferase-related prot...		Lus10034423 [exp]	7.3	0.9303
AT3G54100			O-fucosyltransferase family pr...		Lus10021119 [exp]	7.5	0.9392
AT2G41010		ATCAMBP25	calmodulin (CAM)-binding prote...		Lus10016205 [exp]	7.5	0.9104

Compare expression of checked genes

Lus10029339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.