Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06570 202 / 9e-63 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G05120 96 / 4e-22 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 95 / 5e-22 ATCXE17 carboxyesterase 17 (.1) AT5G27320 94 / 2e-21 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 93 / 5e-21 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 88 / 2e-19 ATCXE20 carboxyesterase 20 (.1) AT1G47480 81 / 3e-17 alpha/beta-Hydrolases superfamily protein (.1) AT1G68620 80 / 9e-17 alpha/beta-Hydrolases superfamily protein (.1) AT2G45600 76 / 3e-15 alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 73 / 3e-14 ATCXE18 carboxyesterase 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016204 [exp] 332 / 9e-114 AT5G06570 260 / 7e-86 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015988 [exp] 234 / 8e-75 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015989 [exp] 233 / 1e-74 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036168 [exp] 191 / 2e-58 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008439 [exp] 181 / 2e-54 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10013377 [exp] 176 / 7e-49 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013376 [exp] 163 / 1e-47 AT5G06570 256 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10013774 [exp] 100 / 7e-24 AT5G23530 315 / 2e-106 carboxyesterase 18 (.1) Lus10024087 [exp] 98 / 8e-23 AT5G16080 187 / 1e-56 carboxyesterase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G198800 [exp] 253 / 2e-82 AT5G06570 373 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.016G065000 [exp] 252 / 5e-82 AT5G06570 376 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G155800 [exp] 192 / 8e-59 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G127600 [exp] 107 / 2e-26 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1) Potri.001G032400 [exp] 104 / 2e-25 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G192650 [exp] 102 / 1e-24 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1) Potri.008G118400 [exp] 102 / 2e-24 AT1G68620 345 / 4e-118 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G031500 [exp] 100 / 1e-23 AT1G68620 159 / 5e-46 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G113700 [exp] 99 / 2e-23 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.003G192600 [exp] 99 / 3e-23 AT1G68620 173 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10029341 pacid=23139828 polypeptide=Lus10029341 locus=Lus10029341.g ID=Lus10029341.BGIv1.0 annot-version=v1.0 ATGGGTTCACTTCCTCAAGTAGTGGAAGATTGCATGGGAGTTCTCCAACTCTTCAACGACGGCACCGTTTCACGTCTCCAAACCATCAACTTCCCCTTCC CTACAATCAACGACCAATCCGTCCTCCACAAGGACTGCCTCTTCCACAAACCGCACAACCTCCGCCTACGCCTCTACAAACCCGCCGCCGCCGCACGACG GCCCCGCCCCCTCCCCCCCCCCCTTCCCCTATCACCCTCTGTCGCCTCTTCTACTTCCACGGCGGGGGATTCTGCCTCGGCTCCCGCGACTGGCCCAACT TCCACAACAGCTGCCAGCGTCTCTCCTCGGCGTTGGACGCGCTTGTGGTGGCTCCGGATTACCGGCTGGCACCCGAACATAGGCTCCCGGCGGCGGTGCA CGACGCGGCTGCCTGCGGCAGTGGACGACGGCGTCGCTGCCTTGAAGTGGCTGAAGTTGAGTGATGATGATTGGTTGACTGGTGGGGGAGTTGACTTTGA CCGGGTTTTTGTGCTGGGTGACTCGTCCGGGGGAAATATTGCTCACCATTTAGCGGTTCGGCTCGGGGCTGGTTCGACCGGTTTGGATCCGGTTCGAGTC AGGGGGTATGTTTTGATGGCGCCGTTTTTCGGTGGGGTTGATCGGACCGAGTCTGAAGAAGGGACGAGTGAGGAGTTGCTCACCTTGGAGGCTCTTGACA GGTTTTGGAGACTATCTTTGCCGCAGGGAGAAACCAGGGACCATCCGATGGCAAACCCATTTGGACCGGCTAGCGTGAACCTGGACAAGGTGGAGACTGA CCCGATGTTGGTGATCGTCGGGGAATGCGAGCTGCTGAGGGATAGAGGTCGCGACTATGCTATGAGGCTCAAAGAGATGGGGAAGAAAGTCGAGTACTTC GAGATCAAAGGCAAGCAACATGGTTCTTTCACTAACGACCCTTACTCCGAGACTTCCCATGATATCATCAATATCCTCAGCTGGTTCATCCTTCAAAACT CCGGTTGA
AA sequence Show only first row Show all	>Lus10029341 pacid=23139828 polypeptide=Lus10029341 locus=Lus10029341.g ID=Lus10029341.BGIv1.0 annot-version=v1.0 MGSLPQVVEDCMGVLQLFNDGTVSRLQTINFPFPTINDQSVLHKDCLFHKPHNLRLRLYKPAAAARRPRPLPPPLPLSPSVASSTSTAGDSASAPATGPT STTAASVSPRRWTRLWWLRITGWHPNIGSRRRCTTRLPAAVDDGVAALKWLKLSDDDWLTGGGVDFDRVFVLGDSSGGNIAHHLAVRLGAGSTGLDPVRV RGYVLMAPFFGGVDRTESEEGTSEELLTLEALDRFWRLSLPQGETRDHPMANPFGPASVNLDKVETDPMLVIVGECELLRDRGRDYAMRLKEMGKKVEYF EIKGKQHGSFTNDPYSETSHDIINILSWFILQNSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10029341 [exp]	0	1
AT5G01760			ENTH/VHS/GAT family protein (....		Lus10014155 [exp]	1.0	0.8826
AT4G38260			Protein of unknown function (D...		Lus10013833 [exp]	10.6	0.7640
AT4G17770		ATTPS5	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10019982 [exp]	12.1	0.8305
AT4G32600			RING/U-box superfamily protein...		Lus10008106 [exp]	30.8	0.7445
AT4G12010			Disease resistance protein (TI...		Lus10012246 [exp]	31.7	0.8000
AT1G23780			F-box family protein (.1)		Lus10006139 [exp]	35.5	0.7941
AT1G67340			HCP-like superfamily protein w...		Lus10015784 [exp]	44.0	0.7876
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10001081 [exp]	44.0	0.7813
					Lus10014377 [exp]	47.6	0.7781
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10002849 [exp]	58.9	0.7131

Compare expression of checked genes

Lus10029341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.