Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06560 390 / 4e-131 Protein of unknown function, DUF593 (.1) AT3G11850 338 / 5e-111 Protein of unknown function, DUF593 (.1.2) AT3G54740 151 / 2e-40 Protein of unknown function, DUF593 (.1.2) AT5G57830 82 / 1e-16 Protein of unknown function, DUF593 (.1) AT5G16720 71 / 1e-12 Protein of unknown function, DUF593 (.1) AT4G30830 68 / 4e-12 Protein of unknown function, DUF593 (.1) AT2G24140 65 / 1e-11 Protein of unknown function, DUF593 (.1) AT4G13630 58 / 1e-08 Protein of unknown function, DUF593 (.1.2) AT1G04890 57 / 2e-08 Protein of unknown function, DUF593 (.1) AT4G13160 55 / 5e-08 Protein of unknown function, DUF593 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016203 [exp] 858 / 0 AT5G06560 475 / 2e-164 Protein of unknown function, DUF593 (.1) Lus10015990 [exp] 502 / 2e-175 AT5G06560 467 / 8e-162 Protein of unknown function, DUF593 (.1) Lus10012288 [exp] 499 / 2e-174 AT5G06560 464 / 2e-160 Protein of unknown function, DUF593 (.1) Lus10036599 [exp] 92 / 6e-20 AT4G30830 179 / 2e-52 Protein of unknown function, DUF593 (.1) Lus10035817 [exp] 81 / 4e-16 AT4G30830 175 / 4e-51 Protein of unknown function, DUF593 (.1) Lus10010774 [exp] 81 / 4e-16 AT5G57830 145 / 8e-40 Protein of unknown function, DUF593 (.1) Lus10022171 [exp] 80 / 6e-16 AT5G57830 141 / 3e-38 Protein of unknown function, DUF593 (.1) Lus10016673 [exp] 68 / 1e-11 AT4G13630 237 / 6e-70 Protein of unknown function, DUF593 (.1.2) Lus10004050 [exp] 68 / 1e-11 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065200 [exp] 471 / 3e-162 AT5G06560 517 / 4e-180 Protein of unknown function, DUF593 (.1) Potri.006G199000 [exp] 445 / 4e-152 AT5G06560 523 / 0.0 Protein of unknown function, DUF593 (.1) Potri.018G103500 [exp] 91 / 2e-19 AT5G57830 169 / 5e-48 Protein of unknown function, DUF593 (.1) Potri.006G181300 [exp] 91 / 2e-19 AT5G57830 162 / 3e-45 Protein of unknown function, DUF593 (.1) Potri.012G073400 [exp] 56 / 4e-08 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1) Potri.002G242900 [exp] 56 / 6e-08 AT4G13630 187 / 3e-51 Protein of unknown function, DUF593 (.1.2) Potri.017G055100 [exp] 55 / 8e-08 AT4G13630 211 / 2e-59 Protein of unknown function, DUF593 (.1.2) Potri.017G129200 [exp] 51 / 2e-06 AT5G16720 286 / 2e-84 Protein of unknown function, DUF593 (.1) Potri.005G220600 [exp] 50 / 2e-06 AT1G08800 159 / 1e-39 Protein of unknown function, DUF593 (.1.2) Potri.015G068400 [exp] 50 / 3e-06 AT1G74830 340 / 1e-111 Protein of unknown function, DUF593 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [flax] [poplar] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Lus10029342 pacid=23139804 polypeptide=Lus10029342 locus=Lus10029342.g ID=Lus10029342.BGIv1.0 annot-version=v1.0 ATGGATTTGGAATTAGCTGCACCATTTGATCAATCACCTAGGGATCGGGGGAGATGCTGCAGTTGTGGATGTGGTAGGTGTTCTTCCAGAGCTTCATGGA CTCGATCCGTGAAGAGGAAATACGACGAATTCGAAGGGGGGAAGCCATTCATTATACCAGGGCTTAATGTGGGGGTATCGAATCCACGCGTGCAAATTGA GAACGAGATTATCGCCCTGCGAGACACGGTGACCAGCCAGCAGCAGGCGATACAGGACTTGTACACAGAGCTGGAAGAGGAGAGGAATGCTGCCTCGTCA GCTGCTAGCGAGGCGATGTCGATGATCCTGAGGTTGCAGAGGGAGAAAGCCGAGGTGCAAATGGAAGCCAGGCAGTTCAAGCGTTTCGCTGAGGAGAAGA TGGCCCACGATCAAGAAGAGCTGGTTTTGTTAGAGGACGTGATTTACAAGAGGGATCAGGTGATTCAGTCTCTTACTTGCGAAGCACAAGCGTACAAGCA TAGAATGATGAGTTTCGGGCTTACAGAGTCTGAGGTGGACGGCGGTTTCAGTAGGAATCAGAGCTTGTCCGATACTGAGTTCCCAGATTACGAGTATCCA CCTTTGAAATGCAATGTGAATGAGAATCAGCCTCTTATGGAGGCTGATTGTGATGAAGAACAAGCACAAGAAGTTGTGGATGTTGAGAAGTACGCATTTG GCGAAACCCCTCGGTACGGTGAAGTTCCTCGACATGGTGAGGCTCAGACTCCTCGAGGTAAGGATCATTTGAAGAATCTGGAGTATAGAATCTACCAGAT GGAGAGGTGTCCTAGCGATGTTTCGACCGGGAAGCAGATTCTGGAGAAGGTGATAGTCGGGCATTCACCTAGGAAGACTAGACACAGCAGGATCTTATCT GTGGAGAGCTCGGGTTCATTCAAAGGTGCTCCTCCTGATTCGCCTTGCTACAAGTTTCCGAATAGCTTTAAGAAGGCGGATTATGTCACGCACCCTGTGG AACAACATAAGTATCCTAGAAAAGCGGATAATGTCTCGGAGTTTGATGAGATGGATGATCGAGTTTACACCATTGACTCTGTACACAATGGTGTAACGGA TCATAAAACTGCTGGTGATGATTATGTTTCGTCTCCTATTAGGGATGATTTTGATCAGCCTGACCTTAACGATCCGGATGTTAAGACACTGTATTCAAGG CTTCATGCGCTGGAGGCTGATAGGGAATCGATGAGGCAGGCTATTATCTCGATGCGTACCGATAAAGCGCAGCTGGTACTGCTCAAGGAAATCGCGCAGC AGTTGTGCAAGGATGCTACACCGGAGCGTAGATCGCCTATGAAGAAGCCTTCCATTGCCGGAAGCTTGAAGCTCGCATCGGTTCTCAAGTGTGTCACGTC CTTTGCTTTCTGGAGGAAGAGAGCTCGTGAGAGGCGGTTCGGACCTGGACCTAATGATGCTGGGTTGCTGATGCTTCTGGACGAAGGGTCTCGAGCAAGG CAGCATTGGAGATTATTGTCAAGAACCCACCTATAA
AA sequence Show only first row Show all	>Lus10029342 pacid=23139804 polypeptide=Lus10029342 locus=Lus10029342.g ID=Lus10029342.BGIv1.0 annot-version=v1.0 MDLELAAPFDQSPRDRGRCCSCGCGRCSSRASWTRSVKRKYDEFEGGKPFIIPGLNVGVSNPRVQIENEIIALRDTVTSQQQAIQDLYTELEEERNAASS AASEAMSMILRLQREKAEVQMEARQFKRFAEEKMAHDQEELVLLEDVIYKRDQVIQSLTCEAQAYKHRMMSFGLTESEVDGGFSRNQSLSDTEFPDYEYP PLKCNVNENQPLMEADCDEEQAQEVVDVEKYAFGETPRYGEVPRHGEAQTPRGKDHLKNLEYRIYQMERCPSDVSTGKQILEKVIVGHSPRKTRHSRILS VESSGSFKGAPPDSPCYKFPNSFKKADYVTHPVEQHKYPRKADNVSEFDEMDDRVYTIDSVHNGVTDHKTAGDDYVSSPIRDDFDQPDLNDPDVKTLYSR LHALEADRESMRQAIISMRTDKAQLVLLKEIAQQLCKDATPERRSPMKKPSIAGSLKLASVLKCVTSFAFWRKRARERRFGPGPNDAGLLMLLDEGSRAR QHWRLLSRTHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06560			Protein of unknown function, D...		Lus10029342 [exp]	0	1
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10022458 [exp]	3.0	0.9077
AT4G17770		ATTPS5	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10019982 [exp]	4.0	0.8971
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Lus10027259 [exp]	5.7	0.8875
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10010521 [exp]	7.1	0.8628
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10020070 [exp]	7.7	0.8951
AT2G45500			AAA-type ATPase family protein...		Lus10038001 [exp]	7.9	0.8650
AT5G25770			alpha/beta-Hydrolases superfam...		Lus10011694 [exp]	8.3	0.8282
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10014149 [exp]	10.4	0.8698
AT3G58750		CSY2	citrate synthase 2 (.1)		Lus10031384 [exp]	10.9	0.8379
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10011352 [exp]	11.2	0.8504

Compare expression of checked genes

Lus10029342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.