Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06550 708 / 0 unknown protein AT1G78280 256 / 2e-75 transferases, transferring glycosyl groups (.1) AT5G63080 96 / 6e-21 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G20810 66 / 2e-11 JMJ30, JMJD5 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G19840 55 / 1e-07 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016202 [exp] 905 / 0 AT5G06550 724 / 0.0 unknown protein Lus10036482 [exp] 263 / 7e-78 AT1G78280 1194 / 0.0 transferases, transferring glycosyl groups (.1) Lus10010350 [exp] 262 / 2e-77 AT1G78280 1211 / 0.0 transferases, transferring glycosyl groups (.1) Lus10001249 [exp] 52 / 3e-07 AT5G63080 232 / 8e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10031247 [exp] 50 / 4e-06 AT3G20810 500 / 8e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065400 [exp] 735 / 0 AT5G06550 711 / 0.0 unknown protein Potri.002G099400 [exp] 254 / 2e-74 AT1G78280 1234 / 0.0 transferases, transferring glycosyl groups (.1) Potri.015G080400 [exp] 105 / 3e-24 AT5G63080 548 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G016200 [exp] 70 / 2e-12 AT3G20810 540 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Potri.005G215200 [exp] 51 / 1e-06 AT5G19840 579 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02373 [flax] [poplar] JmjC JmjC domain, hydroxylase
Representative CDS sequence Show only first row Show all	>Lus10029343 pacid=23139926 polypeptide=Lus10029343 locus=Lus10029343.g ID=Lus10029343.BGIv1.0 annot-version=v1.0 ATGCTGAGCTGCAGAAGCACACTGCTCTCTCTAGCCATAAGAAAAAACAAGAACAAGAAGACGAAGACGAAGACGAAGAAGAACAACAACAGAAAGACCA AATCCAGAAGAACACCCGCCATTTCCAACCACCATCAACAAGAAGAAAAAACTCCACCTGAAGAAGATGAAGAAGAAGAAGGGCTTAACTTTAACCTCAA GGGTTCAGCTCCATCACACGCCCATGGCGTCCAGCCACTCGGAAACCTCTACTTCAACCCGGGCGCCGTCAATTCACGGAACACCGGTTTAGGTAATCTC CAATTTTTATCAGACGAGCTGGTTCTCGACATATTGGGGCTTCTCAATGCTACACACCTGGGAAATTTATCCGCCGTGAGTAAATCCTTTTATGTTTACG CCAATCATGAGCCGATTTGGAGGAACCTTGTGCTGGAAGAGCTGAAAGGTGGATTCTTTTTCAGTGGGTCGTGGAGATCTACTTACATTGCTGCTCGTTA TGAAAATGTTGATGATTATAATCTAGGGTTTGCGAAATTGAAAGTTAGGGATTTCTACTCGGACTATCTATTCCAGAGTTGGTTGTGTGCTAATCTGGAG ATGAAACCTGAGTGGCTCGAGAGGGATAACATAGTTAGGAAGAGAGGGATTAGTGTCGAGGAATTCATGTCGAATTTCGAGGAACCGAATAAGCCGGTGT TGCTTGAAGGGTGCATTGATGGCTGGCCTGCTTTGCAGAAATGGATTGATAGGGATTACCTGATTAGGGAATGTGGAGATGTGAGGTTTTCGGTTGGCCC GGTGAAGATGAAGCTTGATGAGTACTTTAATTACTCGGATCGAGTTAAGGAAGAGAGGCCATTGTATCTGTTCGATCCGAAGTTCGCTGAGAAAGTTCCG GTGCTGGATTTGGATTATGAGGTTCCGGCTTACTTTCGGGAGGATTTGTTCAGCGTTTTGGGAAAGGAGAGGCCGGATTATCGGTGGATTATAATGGGTC CTGAAGGGTCTGGTTCTTCGTTCCACATTGATCCTAATTCGACGTCAGCTTGGAATGCGGTGATTAAGGGTTCTAAGAAGTGGATTTTGTTCCCTCCCGA TGTGGTACCGCCCGGTGTGCATCCTAGCCCGGATGGGGCAGAGGTGGCTTGTCCGGTTTCTATAATCGAATGGTTCATGAACTTTTATGGCGCTACGAAG AATTGGCAGAAGAGACCTGTTGAGTGTATCTGTAGAGCCGGGGAAGTGATTTTCATACCGAATGGATGGTGGCATCTGGTGATCAACCTGGAAGAATCCA TTGCCATTACTCAGAACTATGTTAGCAGGAGGAACTTGCTGAACGTTCTAGATTTTCTCAAGAAGCCGAATGCTAGTGAACTCGTGTCTGGAACTCGAGA CAGGGTGAACCTACACGACAAGTTCAGGAACGCCGTGGAGGCACATCTGCCACCGGGAACTATCGATCGATTGGTGGAGAAAGCCGAAGAGGAGAAGAAG GCTCAACTGAAGAAAGTTTCATTCTGGGACTCTATCTTAGATTCTCAAGCTGGTGGCTTCAAGTTTGGCTTCTGA
AA sequence Show only first row Show all	>Lus10029343 pacid=23139926 polypeptide=Lus10029343 locus=Lus10029343.g ID=Lus10029343.BGIv1.0 annot-version=v1.0 MLSCRSTLLSLAIRKNKNKKTKTKTKKNNNRKTKSRRTPAISNHHQQEEKTPPEEDEEEEGLNFNLKGSAPSHAHGVQPLGNLYFNPGAVNSRNTGLGNL QFLSDELVLDILGLLNATHLGNLSAVSKSFYVYANHEPIWRNLVLEELKGGFFFSGSWRSTYIAARYENVDDYNLGFAKLKVRDFYSDYLFQSWLCANLE MKPEWLERDNIVRKRGISVEEFMSNFEEPNKPVLLEGCIDGWPALQKWIDRDYLIRECGDVRFSVGPVKMKLDEYFNYSDRVKEERPLYLFDPKFAEKVP VLDLDYEVPAYFREDLFSVLGKERPDYRWIIMGPEGSGSSFHIDPNSTSAWNAVIKGSKKWILFPPDVVPPGVHPSPDGAEVACPVSIIEWFMNFYGATK NWQKRPVECICRAGEVIFIPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKKPNASELVSGTRDRVNLHDKFRNAVEAHLPPGTIDRLVEKAEEEKK AQLKKVSFWDSILDSQAGGFKFGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06550			unknown protein		Lus10029343 [exp]	0	1
AT5G42790		ARS5, ATPSM30, ...	ARSENIC TOLERANCE 5, proteasom...		Lus10007396 [exp]	1.7	0.9417
AT2G46900			unknown protein		Lus10010275 [exp]	3.9	0.9356
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10003171 [exp]	4.0	0.9356
AT3G22670			Pentatricopeptide repeat (PPR)...		Lus10041193 [exp]	6.2	0.9195
AT5G07900			Mitochondrial transcription te...		Lus10041122 [exp]	7.3	0.9314
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Lus10016137 [exp]	7.9	0.9343
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019904 [exp]	10.6	0.9342
AT3G57490			Ribosomal protein S5 family pr...		Lus10027358 [exp]	11.4	0.9377
AT3G02650			Tetratricopeptide repeat (TPR)...		Lus10013236 [exp]	11.7	0.9346
AT1G08400			RINT-1 / TIP-1 family (.1)		Lus10036104 [exp]	12.2	0.9112

Compare expression of checked genes

Lus10029343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.