Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06540 786 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 563 / 0 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 562 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40405 530 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 515 / 5e-177 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G62890 495 / 1e-169 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49142 492 / 7e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 490 / 3e-165 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 481 / 3e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22690 478 / 4e-159 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014298 [exp] 540 / 0 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 539 / 0 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 538 / 0 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 533 / 0 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 510 / 3e-173 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 504 / 6e-171 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 504 / 1e-170 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020743 [exp] 499 / 9e-170 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 493 / 5e-168 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065500 [exp] 927 / 0 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 555 / 0 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 555 / 0 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G191200 [exp] 533 / 0 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 530 / 0 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G011000 [exp] 530 / 4e-180 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 515 / 3e-175 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G001000 [exp] 506 / 3e-173 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G119000 [exp] 503 / 1e-171 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G083700 [exp] 508 / 4e-171 AT3G22690 1050 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10029344 pacid=23139819 polypeptide=Lus10029344 locus=Lus10029344.g ID=Lus10029344.BGIv1.0 annot-version=v1.0 ATGGCAGGCGCCAGCAGCAGCAGCTTAGTTCTAAGAACACTGAATCTCAAGAACCCAAAGCTCCTGCTTCTCGAATCCTGCTCCGCCATCTCCGACTTGA AAATCATCCACGCCCACATGATCAGAACCCTAACAATCTCCGACGTATTCGCCGCTAGCCGCTTGATCTCTTCCTCCGTTAACGCGGGCTTCCTCGACTA CGCCGTCACAATCTTCCGCCAAGTTTCATATCCTAATCTCTTCATCTTCAACGCATTGATCAGAGGATTCTCCGCCAGCCGTGATCCCTCTCAGTCGTTC CGTTTCTACCTCCATTCCCGCCGCGCCGGAATCCTCCCCGATAATCTCACTTACCCGTTCCTCGTCAAGTCTTGTGCCGAAACTGGTTCGTTGGAGATGG GAGCTCAAGCTCACGGCGAAATCGTCGTCCGTGGATTTGAAAACGATCTGTTCATCCAGAATTCGCTCGTCAACATGTACGCTCATTTCGGGGAAATTGT TTCCGCGAGGTGTGTATTTAATGGGATTCAGAATCTGGACGTTGTCTCGTGGACGTCAATGATAGCCGGATACAACAAGGTTGGCGATGTTGTTTCCGCA CGTCAACTGTTCGATAAAATGCCGGAAAGAAACTTGGTCACCTGGAGCACGATGATCAACGGGTATTTCAAAAACAGTTTCTTCAAGGAAGCAATAGAGC TCTTTCGTGTTCTTCAATCACGAGGAATTCGAGCTAACGAGACGGTGATGGCCAGCGTGGTTGCTTCCTGTGCTCATTTGGGCGCACTGGAAATCGGAGA GAAAGCTCATGATTATATAGTAAGTAACAACCTGACGCTGAATTTGATTCTGGGAACTGCTCTTGTCGAAATGTACTCGAAATGCGGTTCGATTGATAAG GCGGTCAAGGTATTTGACGAGCTACCTGAGAAGGATGCATTGAGCTGGACAGCTCTAATCTCTGGATTCGCAGTGCACGGATGCGCAAACAAGGCAGTCG ATTACTTCTCGAGAATGGTATCGAGCGGCGTGACCCCACGCGAGATAACATTCACGGCTGTTTTATCGGCTTGCAGCCACGGAGGATTGGTCGAAAAAGG GCGGGAGATATTCGAAAGAATGAAGGTAGATTTCGGTGTTAACCCGAGGCTCGAGCATTACGGGTGTATGGTCGATCTGCTGGGCCGGGCGGGGAAGTTA GCCGAAGCGGAGAAGTTCGTTCTCGACATGCCAATCGAGCCAAATGCGCCGATTTGGGGGGCGATACTTGGGGCCTGCAAGATACACAGGAATGCTGATG TTGCGGAGAGGGTAGGGAAGATTCTGACCGAGTTAAAACCCGAACACAGCGGTTACTACGTTCTGCTTTCGAACATTTTCGCCCGGGCGAACCGGTGGAA GAATGTCGAGGAAATGAGGGTGGTGATGAAGGAAAAGGGAGTGAAGAAGCCTCCGGGATATAGCTTAATCGAGATGGATGGTGAGGTTCATCGGTTTACC TTGGGAGACAAGTCACACCCGGAAATCGACCGGATCGAGAAGACTTGGGAAGAGATAGTGAAGAGGATAAGGAATGAAGGGTATTTAGGGAACACTGATG ATGCATTGTTTGATGTTGAGGAAGAAGAGAAGGAAACTGCAATTTTTCGACATAGCGAGAAGCTTGCGATCGCCTTCGCGATCATGAAGAGTAAGGATGG ATGTAAGCCTATTAGGATAGTGAAGAACTTGAGGGTTTGTGAAGACTGCCACACTGCTAGTAAGTTGATTTCTAAAGTTTATGGTAGGGAGTTGATTGTT AGGGATCGAAATCGGTTCCATCATTTTAGAGATGGAACTTGTTCTTGCAAGGATTACTGGTGA
AA sequence Show only first row Show all	>Lus10029344 pacid=23139819 polypeptide=Lus10029344 locus=Lus10029344.g ID=Lus10029344.BGIv1.0 annot-version=v1.0 MAGASSSSLVLRTLNLKNPKLLLLESCSAISDLKIIHAHMIRTLTISDVFAASRLISSSVNAGFLDYAVTIFRQVSYPNLFIFNALIRGFSASRDPSQSF RFYLHSRRAGILPDNLTYPFLVKSCAETGSLEMGAQAHGEIVVRGFENDLFIQNSLVNMYAHFGEIVSARCVFNGIQNLDVVSWTSMIAGYNKVGDVVSA RQLFDKMPERNLVTWSTMINGYFKNSFFKEAIELFRVLQSRGIRANETVMASVVASCAHLGALEIGEKAHDYIVSNNLTLNLILGTALVEMYSKCGSIDK AVKVFDELPEKDALSWTALISGFAVHGCANKAVDYFSRMVSSGVTPREITFTAVLSACSHGGLVEKGREIFERMKVDFGVNPRLEHYGCMVDLLGRAGKL AEAEKFVLDMPIEPNAPIWGAILGACKIHRNADVAERVGKILTELKPEHSGYYVLLSNIFARANRWKNVEEMRVVMKEKGVKKPPGYSLIEMDGEVHRFT LGDKSHPEIDRIEKTWEEIVKRIRNEGYLGNTDDALFDVEEEEKETAIFRHSEKLAIAFAIMKSKDGCKPIRIVKNLRVCEDCHTASKLISKVYGRELIV RDRNRFHHFRDGTCSCKDYW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10029344 [exp]	0	1
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10020679 [exp]	2.8	0.9225
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10032624 [exp]	3.6	0.9268
AT3G57980			DNA-binding bromodomain-contai...		Lus10031219 [exp]	6.9	0.8998
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10013440 [exp]	9.3	0.9222
AT2G11890			adenylate cyclases (.1.2)		Lus10008820 [exp]	12.3	0.9207
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10018588 [exp]	15.0	0.8963
AT1G76810			eukaryotic translation initiat...		Lus10030500 [exp]	17.3	0.9077
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10040451 [exp]	20.5	0.9079
AT5G51700		ATRAR1, RPR2, P...	Required for Mla12 resistance ...		Lus10031688 [exp]	21.8	0.8500
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10020678 [exp]	22.2	0.8858

Compare expression of checked genes

Lus10029344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.