Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54750 464 / 2e-157 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016201 [exp] 1135 / 0 AT3G54750 492 / 2e-168 unknown protein Lus10015991 [exp] 742 / 0 AT3G54750 488 / 4e-166 unknown protein Lus10012287 [exp] 123 / 6e-33 AT3G54750 68 / 3e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065600 [exp] 658 / 0 AT3G54750 557 / 0.0 unknown protein Potri.006G199200 [exp] 654 / 0 AT3G54750 572 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029345 pacid=23139947 polypeptide=Lus10029345 locus=Lus10029345.g ID=Lus10029345.BGIv1.0 annot-version=v1.0 ATGGCCAAAGTAGCGCCTCCGGCTGCTGGTCCGTTGAATGTTGGTCCTGTGGCTAAAAGGAAGACGCCTTCCGAGCTAAGGGGAGAGCAGTTAAGGAGGA CGAGTCTTGCCGAGCTTTTTGGGGATTCTCAGTCTCAGTCATCTAATGAGGGAGAGAATGGGGTTAAGAAGCTGGATGCGTTCAGAAACCGGAAGTACAC CGATACTCGCTTGGATGAACTGTATCCCGCTAAGAAATCCAGATTGAGGATGCCTAATGTGAAAGATAATGTAAAGGAAAAGCAATCAACAGAGCAACCC ACCAATCATTCTACCCTTGCAAGCTTGGCTGCAAAGAGATTGAAGATTTCATGCTTAGAGAAATTTGCTGATTCTGTGGATGTATCAAGAGACGGTAGCA CAAAAGCTCACCAAACTGGTGAAAAGTTTAGTCAGAGTATATTCCGCAGTGTTACTGAGCTTTCATCGTTTGGGGACCAATCCTCGGGACTTGTAGCTGT TGATATGGACAAAGCCTTGAAAGGATTGACGGCTGCCTGTGAACCTGTGAGAAATTCCAGTTTCAATGCTGATTCATCTGGAAAGCCTGAGCATTACTTT GAAAATTTCCGCTCCGAGTGCTCTATACCTGGCAGGAAACCTCCCCTCGACTTCACATTGAAAACAAAGATGCGGCTGATGTGTGCTTGTGCAGTGAGTG GGCTTCATAGGACGCTTATGTCTAGTACATGCAACAGCAGTCCACAGTTTGTGTTTCAACAGGGTTCTGCAGAATACAGCAGTAGCTCATCACAAACTCC GGATTCCCAAATTTGCAGTCCTAAATCTCTGCATTCTTGGGTTTATCCACAGTCTACACTACCACCTGCTGTCATTTCAGTATTGGCTTCGTCAGCTGCA GAGGGAGATTTTCTTAAGAAAAGGCATCTGTCCTGGGAGGAATCATTTCGGAGTCTCTATTACTTGCTTCGTAAGAACATTTGCAATATATTTTATGTGA GTACTTCACATTTTGTGGTACTGTTCACCAGTGAGAATGACTCAGGGAGTCCCAAGTCTTTCTGCAATGCTTACATCTCTCAATCCACTAGAAGTCTCAG GTCCTTGTTACGAGAACATGATGTATGCTTCTCTATGCCACTTTGCCATTCTAAAATGGAGGAAGTGGCCACTGAACATCTAGTTGAGCTTTCAGAGATT GCGAGGCAAAACTTGGGTCAGACTCGTAAGCCTTCCAGCTCGTCTAACGATGTTGATAACACCACACAGTCTTTACTGGCCTTCAACGGGAATAAGGATG TCCAGGGACTATATGATTTCCTCTTAAATTACAGATCTTTCTTGACGCTGTTGTCTGGCATCGACGTTCCAGTACTTTATTCGCCTGTCCCGTTCACAAA TGCTGGTCTTTTTGCTCCCGAGATAAGATGCGTGGATATGAAGAAATCTGACCATACCACAACTTCCCCGAAAGATGCCTCATTGGACGCTCTCAGCTCG ATCATCGAAATCAAAGGAACATGCATCCCGCCATGGATTATCAGCCGCATTTGTGCAATCATGAGCTCTGAAGCGACAAGCTACGAGGCGAGTTTTGCTA CGGAACCCAGATCAATCGGCTTGAACGTTGCAATTAAGATAGCCGACGAGAAATCCAAGTCCAATGCAGAAACTGTGCGAGAAAGTAACGGCAGTGTTGC TTTCGGAATGTCGGAAGCAGTCATTACTCCTTGCTTGAGCTCTGGCTTTCTCACTGGATTGAAGTACAAGGATGATTCTTTCTTGGCCTCCCTCTCACAA GCTTGA
AA sequence Show only first row Show all	>Lus10029345 pacid=23139947 polypeptide=Lus10029345 locus=Lus10029345.g ID=Lus10029345.BGIv1.0 annot-version=v1.0 MAKVAPPAAGPLNVGPVAKRKTPSELRGEQLRRTSLAELFGDSQSQSSNEGENGVKKLDAFRNRKYTDTRLDELYPAKKSRLRMPNVKDNVKEKQSTEQP TNHSTLASLAAKRLKISCLEKFADSVDVSRDGSTKAHQTGEKFSQSIFRSVTELSSFGDQSSGLVAVDMDKALKGLTAACEPVRNSSFNADSSGKPEHYF ENFRSECSIPGRKPPLDFTLKTKMRLMCACAVSGLHRTLMSSTCNSSPQFVFQQGSAEYSSSSSQTPDSQICSPKSLHSWVYPQSTLPPAVISVLASSAA EGDFLKKRHLSWEESFRSLYYLLRKNICNIFYVSTSHFVVLFTSENDSGSPKSFCNAYISQSTRSLRSLLREHDVCFSMPLCHSKMEEVATEHLVELSEI ARQNLGQTRKPSSSSNDVDNTTQSLLAFNGNKDVQGLYDFLLNYRSFLTLLSGIDVPVLYSPVPFTNAGLFAPEIRCVDMKKSDHTTTSPKDASLDALSS IIEIKGTCIPPWIISRICAIMSSEATSYEASFATEPRSIGLNVAIKIADEKSKSNAETVRESNGSVAFGMSEAVITPCLSSGFLTGLKYKDDSFLASLSQ A

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54750			unknown protein		Lus10029345 [exp]	0	1
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10041635 [exp]	1.0	0.9581
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10023818 [exp]	4.9	0.9290
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10016275 [exp]	7.2	0.9205
AT1G04030			unknown protein		Lus10003613 [exp]	7.7	0.9323
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Lus10033979 [exp]	10.6	0.9348
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10011401 [exp]	12.0	0.8981
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10034620 [exp]	15.0	0.9133
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10040956 [exp]	15.2	0.9138
AT5G27550			P-loop containing nucleoside t...		Lus10029914 [exp]	16.2	0.9336
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Lus10019720 [exp]	18.7	0.9329

Compare expression of checked genes

Lus10029345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.