Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38910 833 / 0 CPK20 calcium-dependent protein kinase 20 (.1) AT5G04870 796 / 0 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT3G10660 793 / 0 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT4G35310 691 / 0 CPK5, ATCPK5 calmodulin-domain protein kinase 5 (.1) AT2G17290 690 / 0 ATCPK6, ATCDPK3, CPK6 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) AT4G38230 687 / 0 CPK26, ATCPK26 ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 26, calcium-dependent protein kinase 26 (.1.2.3) AT1G35670 652 / 0 CPK11, ATCDPK2, ATCPK11 calcium-dependent protein kinase 2 (.1) AT4G09570 647 / 0 CPK4, ATCPK4 calcium-dependent protein kinase 4 (.1) AT5G23580 635 / 0 ATCDPK9, CPK12, CDPK9, ATCPK12 CALCIUM-DEPENDENT PROTEIN KINASE 12, ARABIDOPSIS THALIANA CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9, calmodulin-like domain protein kinase 9 (.1) AT5G12180 616 / 0 CPK17 calcium-dependent protein kinase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016200 [exp] 1082 / 0 AT2G38910 868 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10015992 [exp] 949 / 0 AT2G38910 880 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10012285 [exp] 945 / 0 AT2G38910 884 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10008958 [exp] 798 / 0 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10028862 [exp] 796 / 0 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10013603 [exp] 758 / 0 AT3G10660 803 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10021248 [exp] 758 / 0 AT3G10660 809 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10001384 [exp] 702 / 0 AT4G35310 949 / 0.0 calmodulin-domain protein kinase 5 (.1) Lus10022986 [exp] 701 / 0 AT4G35310 950 / 0.0 calmodulin-domain protein kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G199400 [exp] 865 / 0 AT2G38910 899 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.016G065700 [exp] 865 / 0 AT2G38910 892 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.008G014700 [exp] 806 / 0 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.010G244800 [exp] 806 / 0 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.006G200600 [exp] 746 / 0 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1) Potri.016G066700 [exp] 744 / 0 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.004G207300 [exp] 701 / 0 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.009G168600 [exp] 696 / 0 AT2G17290 968 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.T012800 [exp] 679 / 0 AT1G35670 795 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.019G083200 [exp] 673 / 0 AT4G09570 835 / 0.0 calcium-dependent protein kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10029346 pacid=23139957 polypeptide=Lus10029346 locus=Lus10029346.g ID=Lus10029346.BGIv1.0 annot-version=v1.0 ATGTATTCGTACAAACAGTTACAGCTGCCGTATGGCGGAACCGGCGACCGGACGACCTACTCCCCGCTCCGGACAAGAAAAAACGCAACAACAACAGCAA GAAGGGGTGGCGAACCAAGCCCGAAAACCCCACCTCCGCAGGTCAAGATGGGTGAAAACAACGATAAACCTATGAATCATGAGAAGTCAATCAAGCCGGA AATGCGAGATGTTCCGATAAGTAGTACTAGTAGACGAGGAGGGCAGGAAGAATCCAACAAGGCCAAGAAGCCTGCTCAGATGAAGAGACTCGCAAGTGCA GGGGTACAAGCCGGATCAGTATTGGGGAGAAAGACAGGGAACTTAAAGGAGATTTACAGTCTGGGGAGAAAACTCGGGCAAGGTCAGTTCGGAACGACTT TTCTATGTATCGAGAAGGCGACGAGGAAAGAATTCGCTTGCAAATCGATTGCGAAGAGGAAGCTGACCACTCAGGAAGATGTGGAGGATGTTAGGAGGGA GATTCAGATTATGCACCATTTGGAAGGGCATCCCAATGTGATTAAGATTATCGATGCATACGAGGATGCGGTTGCTGTTCATGTTGTTATGGAGCTTTGT GCAGGTGGAGAGCTTTTCGATAGGATCATTCAGAGAGGGCATTACACGGAGAGAAAGGCGGCTGAGCTTGCCAGGTTCATACTTGGAGTTGTGGAAGCTT GTCATTCTTTGGGTGTTATGCATAGAGACCTCAAGCCTGAGAATTTCCTGTTTGTTAGCCAGAAAGAGGATGCCACTCTTAAGACTATCGACTTCGGTCT CTCGATGTTCTTCAAGCCTGGCGAAACGTTCACTGACGTTGTTGGGAGCCCCTACTACGTAGCACCGGAGGTGTTGCGAAAGCATTATGGTTCGCCGTGT GATGTTTGGAGCGCTGGTGTTATCATATATATCTTGTTAAGTGGCGTTCCTCCATTTTGGGATGAAACCGAGCAAGGTATATTTGAACAGGTTTTAAAAG GCGACCTAGACTTCGCTTCCGAACCATGGCCGAATATATCAGATGGTGCTAAAGATTTAGTTCGGAGGATGCTTGTGAGAGACCCTAAAAAGCGCCTCAC TGCCCATGAAGTTCTACGCCACCCTTGGGTACAAGATGGGCTTGCTCCTGATAAACCTCTTGATTCTGCTGTTATAAGTCGCTTGAAACAGTTCTCAGCC ATGAACAAGCTGAAGAAAATCGCAATACGAGTTATTGCTGAAAGCATGTCCGAAGAGGAAATTGCAGGGTTGAGAAATATGTTCAAGATGATAGATGCAG ACGGTAGCGGACATATCACTCTCGAGGAACTGAAGAAAGGTTTAGAGAAAGCAGGAGCTAATCTAAAGGAGGGTGAAATCGTCGGGTTGATGCAAGCAGC GGACGTCGACAACAGTGGAACGATCGACTATGGCGAGTTCATAGCCGCAATGATTCACTTGAACAAAATACAGAAGGAAGACCATCTATTTGCGGCGTTC TCGTACTTCGACAAAGATGGGAGCGGTTACATCACTGCAGACGAGCTCCAACAGGCCTGCGAGCAGTTCGGGTTAGGGGATTTTCACATTGCGGACATAA TCGACGAAGTTGACCAGGATAATGATGGGCGGATCGATTACAGCGAATTTGTGGCTATGATGCAAGACTCTAAAATTAGGCCAGCTGGAAAATAA
AA sequence Show only first row Show all	>Lus10029346 pacid=23139957 polypeptide=Lus10029346 locus=Lus10029346.g ID=Lus10029346.BGIv1.0 annot-version=v1.0 MYSYKQLQLPYGGTGDRTTYSPLRTRKNATTTARRGGEPSPKTPPPQVKMGENNDKPMNHEKSIKPEMRDVPISSTSRRGGQEESNKAKKPAQMKRLASA GVQAGSVLGRKTGNLKEIYSLGRKLGQGQFGTTFLCIEKATRKEFACKSIAKRKLTTQEDVEDVRREIQIMHHLEGHPNVIKIIDAYEDAVAVHVVMELC AGGELFDRIIQRGHYTERKAAELARFILGVVEACHSLGVMHRDLKPENFLFVSQKEDATLKTIDFGLSMFFKPGETFTDVVGSPYYVAPEVLRKHYGSPC DVWSAGVIIYILLSGVPPFWDETEQGIFEQVLKGDLDFASEPWPNISDGAKDLVRRMLVRDPKKRLTAHEVLRHPWVQDGLAPDKPLDSAVISRLKQFSA MNKLKKIAIRVIAESMSEEEIAGLRNMFKMIDADGSGHITLEELKKGLEKAGANLKEGEIVGLMQAADVDNSGTIDYGEFIAAMIHLNKIQKEDHLFAAF SYFDKDGSGYITADELQQACEQFGLGDFHIADIIDEVDQDNDGRIDYSEFVAMMQDSKIRPAGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38910		CPK20	calcium-dependent protein kina...		Lus10029346 [exp]	0	1
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10039010 [exp]	4.2	0.8178
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10029103 [exp]	12.0	0.8287
AT1G79070			SNARE-associated protein-relat...		Lus10031217 [exp]	15.0	0.7616
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10041877 [exp]	25.2	0.7553
					Lus10024863 [exp]	26.6	0.7482
AT5G09550			GDP dissociation inhibitor fam...		Lus10035634 [exp]	26.7	0.8175
					Lus10022950 [exp]	33.2	0.7502
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10016810 [exp]	34.1	0.8149
AT1G44100		AAP5	amino acid permease 5 (.1)		Lus10029703 [exp]	36.2	0.7273
					Lus10037567 [exp]	36.4	0.8141

Compare expression of checked genes

Lus10029346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.