Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06820 882 / 0 CCR2, CRTISO CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) AT1G57770 201 / 1e-56 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G49555 58 / 1e-08 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016199 [exp] 1087 / 0 AT1G06820 912 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Lus10037348 [exp] 188 / 1e-51 AT1G57770 900 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10035770 [exp] 176 / 1e-47 AT1G57770 832 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10041743 [exp] 72 / 6e-13 AT5G49555 933 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10024010 [exp] 67 / 1e-11 AT5G49555 607 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10014308 [exp] 47 / 3e-05 AT5G49555 850 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066000 [exp] 913 / 0 AT1G06820 903 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Potri.006G199600 [exp] 904 / 0 AT1G06820 877 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Potri.003G005800 [exp] 212 / 9e-61 AT1G57770 869 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.007G025300 [exp] 83 / 2e-16 AT5G49555 943 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00890 [flax] [poplar] FAD_binding_2 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10029347 pacid=23139838 polypeptide=Lus10029347 locus=Lus10029347.g ID=Lus10029347.BGIv1.0 annot-version=v1.0 ATGAACAGCTTAGGAACAACCACCAGTTGCAGCAGCTCCCATTTCCTTTCCCAATTGGGCACTTTCAGACCCTCTACAGCTCACAATCAGAGAAGAATTC AGCGCTATGGACTTCTTGTCCCCAAATTCCAATCCAGAAGAGAAAGAAAAAGAACCGATTTTGCTGTGAGCTCGGCCGTGAGCGTGGTGGATGATGGAAG AATTGGAGGAGCAGTGAGTAAGGAAAGAGGGTATTATGATGCGATTGTGATTGGGTCTGGGATTGGTGGGTTGGTTGCTTCTACACAGTTGGCAGTGAAA GGAGCTAAAGTTATCGTCTTAGAGAAGTATGTGATTCCTGGTGGCAGTTCTGGTTATTATGAGCGTGATGGCTTCACTTTCGATGTTGGTTCCTCTGTCA TGTTTGGTTTCAGTGACAAGGGGAACTTAAACTTGATAACCAAGGCATTGGCAGCAGTTGGCCGTGAGTTGGAGGTGATCCCTGATCCAACCACGGTCCA TTTCCACCTGCCAAATAACCTCTCGGTTCGAGTTCATCGGGAGTACAACGACTTCCTTGCAGAATTGGTCTCGAGATTCCCCCATGAGAAGGAAGGTATC ACTAAGTTCTATGGTGTATCTTGGCAGATATTCAATGCTTTGAACTCGTTGGAACTCAAGTCGCTTGAGGAGCCGATCTACTTGTTTGGCCAGTTCTTTC AGAAGCCTCTTGAGTGTTTAACTCTGGCGTATTATCTACCTCAAAATGCCGGAGACATTGCGAGGAAGTACATAAAAGACCCTGAACTGTTGTCTTTTAT TGATGCTGAGTGTTTTATAGTGAGCACAGTCAATGCTTTGCAGACTCCAATGATCAATGCAGCAATGGTTCTATGTGACAGACATTTCGGAGGAATCAAT TATCCTGTTGGTGGTGTCGGTCAAATTGCGAAGTCCCTAGCGAAAGGTCTGGTTGATCAAGGGAGTGAGATAGCTTACCGGGCAAACGTCACTAACATAA TTCTCGAAAATGGAAAGGCGGTAGGAGTTAGGCTCTCGGATGGAAAGCAGATATTCGCTAAGACAGTTATATCGAATGCAACAAGATGGGATACCTTTGG CAAATTGTTGAAAGGAAAGGAGCTTCCAAAAGAAGAAGAGAATTTCCAGAAAGTTTATGTCCAGGCACCCTCTTTTCTGTCTATTCACTTGGGTGTCAAG TCAGAGGTTCTACCTCCTGACACAGACTGCCATCATTTCATGCTTGAGGATGACTGGGCAAGATTAGAGGCGCCATATGGAAGTATCTTTTTGAGCATTC CCACAATACTGGACAAATCATTGGCTCCAGAAGGATGTCATATTCTCCACATATTTACGACTTCGTCGATTGAAGATTGGGAGGGAATTCCTCGAAAAGA CTACGAGGCAAAGAAGGAAGCTGTTGCTGATGAGATTATTGGCAGATTGGAGAAGAAACTGTTCCCAGGGCTTAGATCCGCAATTGTTTTCAAGGAGGTA GGATCGCCAAAGACTCACAGGCGATACCTTGCTCGAAACGATGGGACATATGGACCTATGCCACGGAACATTCCGAAAGGGTTATTAGGAATGCCATTCA ATACAACAGGTATAGATGGGCTTTACTGTGTTGGTGACAGTTGCTTTCCTGGACAAGGAGTTATAGCAGTGGCCTTTTCTGGAGTAATGTGTGCCCATCG TGTCGCAGCTGATGTCGGTCTCGAAAAGAAGTCGCAGGTCTTGGACACTGCCTTGCTTGGGCTTCTTGGTTGGCTAAGGACACTGGCTTGA
AA sequence Show only first row Show all	>Lus10029347 pacid=23139838 polypeptide=Lus10029347 locus=Lus10029347.g ID=Lus10029347.BGIv1.0 annot-version=v1.0 MNSLGTTTSCSSSHFLSQLGTFRPSTAHNQRRIQRYGLLVPKFQSRRERKRTDFAVSSAVSVVDDGRIGGAVSKERGYYDAIVIGSGIGGLVASTQLAVK GAKVIVLEKYVIPGGSSGYYERDGFTFDVGSSVMFGFSDKGNLNLITKALAAVGRELEVIPDPTTVHFHLPNNLSVRVHREYNDFLAELVSRFPHEKEGI TKFYGVSWQIFNALNSLELKSLEEPIYLFGQFFQKPLECLTLAYYLPQNAGDIARKYIKDPELLSFIDAECFIVSTVNALQTPMINAAMVLCDRHFGGIN YPVGGVGQIAKSLAKGLVDQGSEIAYRANVTNIILENGKAVGVRLSDGKQIFAKTVISNATRWDTFGKLLKGKELPKEEENFQKVYVQAPSFLSIHLGVK SEVLPPDTDCHHFMLEDDWARLEAPYGSIFLSIPTILDKSLAPEGCHILHIFTTSSIEDWEGIPRKDYEAKKEAVADEIIGRLEKKLFPGLRSAIVFKEV GSPKTHRRYLARNDGTYGPMPRNIPKGLLGMPFNTTGIDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADVGLEKKSQVLDTALLGLLGWLRTLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06820		CCR2, CRTISO	CAROTENOID AND CHLOROPLAST REG...		Lus10029347 [exp]	0	1
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039122 [exp]	3.2	0.8650
AT2G26840			unknown protein		Lus10036059 [exp]	3.5	0.8527
AT3G60810			unknown protein		Lus10030273 [exp]	3.9	0.8967
AT2G38420			Pentatricopeptide repeat (PPR)...		Lus10002476 [exp]	5.5	0.8533
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Lus10038276 [exp]	9.8	0.7981
AT1G10660			unknown protein		Lus10029133 [exp]	10.2	0.8717
AT5G27460			Tetratricopeptide repeat (TPR)...		Lus10020948 [exp]	17.0	0.8267
AT3G09210		PTAC13	plastid transcriptionally acti...		Lus10035543 [exp]	18.4	0.8860
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10012532 [exp]	20.1	0.8131
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10022255 [exp]	25.7	0.8731

Compare expression of checked genes

Lus10029347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.