Plant FIBer expression Database

Lus10029348 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G52360 55 / 6e-11 unknown protein
AT2G35850 50 / 2e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016198
[exp]
194 / 1e-65 AT3G52360 59 / 2e-12 unknown protein
Lus10013609
[exp]
49 / 1e-08 ND 37 / 3e-04
Lus10021242
[exp]
47 / 2e-07 ND 38 / 1e-04
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G066200
[exp]
74 / 3e-18 AT3G52360 88 / 3e-24 unknown protein
Potri.006G200000
[exp]
69 / 3e-16 AT3G52360 89 / 9e-25 unknown protein
PFAM info
Representative CDS sequence
>Lus10029348 pacid=23139812 polypeptide=Lus10029348 locus=Lus10029348.g ID=Lus10029348.BGIv1.0 annot-version=v1.0
ATGGAGAATTCAATGGGGGTTGGTCTAATAGCTGCATTTGCAGTCTCCGGTAGCGTGGTTCTCATCTCAACCCAGTTCCATAAACGCCTCGTCTCTAATT
TCATGGACAAGATCGAGACCGAACTCGGTGGGAGGAGGGTTAGGAGAATCCATAATCATGGGAAGAAGCAGAGGAAGATGAAGAGGGTTCGATTCACAGA
GGATGTAACGGAGCTTTCCCCTGTTTCGGATGAACTTTACGACAAGGATGATGAGGAGGAAGATGATTATGGGGATCAGATACTTGGAGGGATGCCTGTG
AATCGGCAGATTCTTTACAAAGGGATTATGGATTACCGGACTATGAAGGACTACCACATTTCCACTTGCATCTAA
AA sequence
>Lus10029348 pacid=23139812 polypeptide=Lus10029348 locus=Lus10029348.g ID=Lus10029348.BGIv1.0 annot-version=v1.0
MENSMGVGLIAAFAVSGSVVLISTQFHKRLVSNFMDKIETELGGRRVRRIHNHGKKQRKMKRVRFTEDVTELSPVSDELYDKDDEEEDDYGDQILGGMPV
NRQILYKGIMDYRTMKDYHISTCI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G52360 unknown protein Lus10029348
[exp]
0 1
AT2G44840 AP2_ERF ATERF13, EREBP ethylene-responsive element bi... Lus10016211
[exp]
4.9 0.8351
AT2G44840 AP2_ERF ATERF13, EREBP ethylene-responsive element bi... Lus10016210
[exp]
5.2 0.7981
AT3G22060 Receptor-like protein kinase-r... Lus10012853
[exp]
10.8 0.7232
AT3G29250 AtSDR4 short-chain dehydrogenase redu... Lus10022562
[exp]
11.4 0.8470
AT2G44840 AP2_ERF ATERF13, EREBP ethylene-responsive element bi... Lus10029318
[exp]
12.2 0.8222
AT5G16990 Zinc-binding dehydrogenase fam... Lus10007832
[exp]
13.5 0.7289
AT1G25270 nodulin MtN21 /EamA-like trans... Lus10020987
[exp]
14.1 0.8247
AT5G62420 NAD(P)-linked oxidoreductase s... Lus10031162
[exp]
15.9 0.7916
AT5G62420 NAD(P)-linked oxidoreductase s... Lus10031739
[exp]
17.7 0.7910
AT1G79460 ATKS1, ATKS, GA... GA REQUIRING 2, ARABIDOPSIS TH... Lus10004443
[exp]
18.2 0.8180

Lus10029348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.