Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11690 106 / 5e-28 unknown protein AT2G27180 72 / 1e-15 unknown protein AT5G06380 69 / 1e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016197 [exp] 417 / 9e-151 AT3G11690 107 / 3e-28 unknown protein Lus10021243 [exp] 216 / 5e-71 AT3G11690 112 / 6e-30 unknown protein Lus10013608 [exp] 211 / 9e-69 AT3G11690 109 / 5e-29 unknown protein Lus10008446 [exp] 71 / 3e-15 AT2G27180 91 / 3e-23 unknown protein Lus10013375 [exp] 64 / 1e-12 AT2G27180 96 / 3e-25 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066300 [exp] 127 / 4e-37 AT3G11690 62 / 5e-12 unknown protein Potri.006G200100 [exp] 97 / 4e-25 AT3G11690 / unknown protein Potri.009G151600 [exp] 89 / 4e-22 AT2G27180 54 / 1e-09 unknown protein Potri.004G190500 [exp] 71 / 3e-15 ND / Potri.001G349700 [exp] 44 / 2e-05 AT3G01516 71 / 2e-15 unknown protein Potri.008G111500 [exp] 40 / 0.0007 AT3G25597 49 / 3e-07 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029349 pacid=23139934 polypeptide=Lus10029349 locus=Lus10029349.g ID=Lus10029349.BGIv1.0 annot-version=v1.0 ATGATATTCGATCTGGAAAATAACGGCGGAGCACGACCGACCCTACTGGCGACAACAAGGGAACCGTCCCTAGTCGTAATCCGACCATCCTCCCCTAAAC TAACCCGCCGGAACTCCTTCCTCCCGCCGCAGCACCACCGCCGGGAATACTCTGTCTCCGATGCCTCTTCCTGCAGCGGCCGGTTCGGCGAGCTCGCCGG AGGTACCACGGCGGAGTGCGTGTCCATCGCTTGCTGCTGCCCTTGCGGAATCGCTAATTTTCTCTTCCTCACCATCTATAAGGTTCCGGTGGGGCTCTGC CGGAAGGCGCTGAGGAGGAAGAGGAGGCAGCATCTGATAAAAAAAGGGGTGTTGATTCCTCGCCGGCGGTGTCAGTGCGGCTGCGACGACACCGAGATTC AGATTCACCCGCTCCACGGCGGCGGATCGCAGTCGTTCGATGTCAACATGATGCGGGTGGTTTTTGAGGATGACGATGAGAAGCGAGGTGGGGAGGAGAT GATGAGGCTGGAGAAGGAGATGTGGGATACTTTTTACGAGACTGGGTTCTGGAGGAGTCCGTCTCAGAGGGAGCCGGTCGTCGTCGTCGCCGGTGACGGC GTCGGGAGGAAGAGCGGGAGAGAAGCTCCGATTGGTAACGAAATGTAA
AA sequence Show only first row Show all	>Lus10029349 pacid=23139934 polypeptide=Lus10029349 locus=Lus10029349.g ID=Lus10029349.BGIv1.0 annot-version=v1.0 MIFDLENNGGARPTLLATTREPSLVVIRPSSPKLTRRNSFLPPQHHRREYSVSDASSCSGRFGELAGGTTAECVSIACCCPCGIANFLFLTIYKVPVGLC RKALRRKRRQHLIKKGVLIPRRRCQCGCDDTEIQIHPLHGGGSQSFDVNMMRVVFEDDDEKRGGEEMMRLEKEMWDTFYETGFWRSPSQREPVVVVAGDG VGRKSGREAPIGNEM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11690			unknown protein		Lus10029349 [exp]	0	1
AT1G15960		ATNRAMP6, NRAMP...	NRAMP metal ion transporter 6 ...		Lus10041652 [exp]	2.4	0.7201
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10017308 [exp]	6.0	0.6988
AT5G05820			Nucleotide-sugar transporter f...		Lus10016446 [exp]	7.5	0.6723
AT5G16550			unknown protein		Lus10033497 [exp]	8.9	0.7180
					Lus10033740 [exp]	11.0	0.7001
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Lus10032815 [exp]	11.0	0.7369
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Lus10007691 [exp]	18.9	0.7262
					Lus10017659 [exp]	25.7	0.6902
AT1G48745			unknown protein		Lus10007969 [exp]	32.6	0.5948
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10043350 [exp]	33.6	0.6467

Compare expression of checked genes

Lus10029349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.