Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66830 44 / 5e-05 F-box family protein with a domain of unknown function (DUF295) (.1) AT4G22060 43 / 9e-05 F-box family protein with a domain of unknown function (DUF295) (.1) AT1G67160 42 / 0.0002 F-box family protein with a domain of unknown function (DUF295) (.1) AT4G22030 42 / 0.0004 F-box family protein with a domain of unknown function (DUF295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016196 [exp] 163 / 1e-48 AT5G20720 315 / 7e-108 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) Lus10025100 [exp] 55 / 2e-08 AT2G17030 335 / 4e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10023984 [exp] 54 / 3e-08 AT2G17030 336 / 2e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10022650 [exp] 42 / 0.0002 AT2G17030 96 / 4e-22 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10026940 [exp] 41 / 0.0006 AT4G17510 327 / 4e-108 ubiquitin C-terminal hydrolase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G134900 [exp] 113 / 5e-29 AT4G17565 99 / 8e-23 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.002G014500 [exp] 86 / 3e-19 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G137700 [exp] 72 / 1e-14 AT4G22165 69 / 9e-13 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.009G140000 [exp] 66 / 2e-12 AT2G17030 370 / 6e-126 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G179685 [exp] 63 / 2e-11 AT2G17030 360 / 2e-121 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.006G015601 [exp] 50 / 5e-07 AT4G22660 59 / 3e-09 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.002G015700 [exp] 47 / 5e-06 AT5G60060 63 / 5e-11 Protein of unknown function (DUF295) (.1) Potri.005G105000 [exp] 42 / 0.0001 AT1G65770 124 / 8e-33 ascorbic acid mannose pathway regulator 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [flax] [poplar] DUF295 Protein of unknown function (DUF295)
Representative CDS sequence Show only first row Show all	>Lus10029350 pacid=23139839 polypeptide=Lus10029350 locus=Lus10029350.g ID=Lus10029350.BGIv1.0 annot-version=v1.0 ATGAACATTGCCTCAAATTATGCGATGCAGCGCTTACATGGCCGATGGGAATCACGCGAAGGAGAAGCTACGGCGCTGCACATAGCACTTGCATTGGTAC GGGACATGGGATATGAGCCATGTGTGTTCGAAATTTATTGCCAATCGATGACACTTGCAGTGATATTTGCTTTGGGCGAACGCGGGACGATCGAGGTCTG GAATTCAGACGGTTCGAGGGTGACGGAGTTCGCGGCGGCCGGCGGACTGGAGCCATTTTTGACGTGGGACGGCGACAGTTTGAGATACTACTTCATCGCT CCCGATCTACTAATTCAGAGGACCGTCGGCGAATCGGTCGACGAAGAAGGGAAGGTGCTATATACGCAAGAAGAACTGTTTGATAACCCCTGTGCGTATG GGACGGTCGGGTTCCAGGTTTACAAGCTGGACGGTGGAGGGAAGAATTGGGTGAAGACGACGAGTTTGGGGGAGAATAGGGCTTTGTTTTTGGGCGAGGG TCACTCTGTTTCAGTTCCGGCAACCGGCGGAGTTGTCGCGGATTGTATCTATTACAACGACGACTATTGGGGAAGGATGGACGAGGGGGATCCCACATAC GGAGGACACGATATCGGGGTGTTCAGCTTGACAGATGGGAAGGTTACGGAGATCGACGGGGAGGTTACTGGGTATTATGCAAAGATTCAGCCGCCGGCGA GTTGGATTGTTCCGACGCCGTCGTTGAAAGAGTCTTAG
AA sequence Show only first row Show all	>Lus10029350 pacid=23139839 polypeptide=Lus10029350 locus=Lus10029350.g ID=Lus10029350.BGIv1.0 annot-version=v1.0 MNIASNYAMQRLHGRWESREGEATALHIALALVRDMGYEPCVFEIYCQSMTLAVIFALGERGTIEVWNSDGSRVTEFAAAGGLEPFLTWDGDSLRYYFIA PDLLIQRTVGESVDEEGKVLYTQEELFDNPCAYGTVGFQVYKLDGGGKNWVKTTSLGENRALFLGEGHSVSVPATGGVVADCIYYNDDYWGRMDEGDPTY GGHDIGVFSLTDGKVTEIDGEVTGYYAKIQPPASWIVPTPSLKES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22060			F-box family protein with a do...		Lus10029350 [exp]	0	1
AT1G58170			Disease resistance-responsive ...		Lus10017231 [exp]	3.6	0.8755
AT1G76750			Protein of unknown function (D...		Lus10004548 [exp]	12.7	0.8647
					Lus10012132 [exp]	31.2	0.8076
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10001589 [exp]	76.4	0.8046
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10032406 [exp]	78.9	0.7979
AT4G36500			unknown protein		Lus10014291 [exp]	89.8	0.7930
					Lus10029451 [exp]	121.0	0.7838
					Lus10022267 [exp]	123.6	0.7339
					Lus10018424 [exp]	127.2	0.7310
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10041626 [exp]	142.7	0.7823

Compare expression of checked genes

Lus10029350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.