Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22000 248 / 4e-80 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) AT4G14220 108 / 8e-27 RHF1A RING-H2 group F1A (.1) AT4G00335 65 / 2e-12 RHB1A RING-H2 finger B1A (.1.2.3) AT3G02290 64 / 7e-12 RING/U-box superfamily protein (.1.2) AT5G15790 64 / 1e-11 RING/U-box superfamily protein (.1.2) AT4G23450 62 / 1e-11 AIRP1, AtAIRP1 ABA Insensitive RING Protein 1, RING/U-box superfamily protein (.1.2.3) AT5G41350 62 / 5e-11 RING/U-box superfamily protein (.1) AT5G38895 59 / 5e-10 RING/U-box superfamily protein (.1.2.3) AT1G14200 54 / 1e-08 RING/U-box superfamily protein (.1) AT1G72310 55 / 3e-08 ATL3 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016195 [exp] 470 / 2e-168 AT5G22000 276 / 2e-91 RING-H2 group F2A (.1.2.3) Lus10013606 [exp] 339 / 6e-116 AT5G22000 337 / 4e-114 RING-H2 group F2A (.1.2.3) Lus10021245 [exp] 333 / 4e-113 AT5G22000 336 / 2e-113 RING-H2 group F2A (.1.2.3) Lus10008447 [exp] 230 / 9e-73 AT5G22000 397 / 4e-137 RING-H2 group F2A (.1.2.3) Lus10013374 [exp] 228 / 1e-71 AT5G22000 397 / 7e-137 RING-H2 group F2A (.1.2.3) Lus10010513 [exp] 136 / 6e-37 AT4G14220 236 / 3e-74 RING-H2 group F1A (.1) Lus10034049 [exp] 134 / 4e-36 AT4G14220 228 / 2e-71 RING-H2 group F1A (.1) Lus10017788 [exp] 66 / 9e-13 AT4G00335 204 / 3e-67 RING-H2 finger B1A (.1.2.3) Lus10024635 [exp] 66 / 2e-12 AT5G41350 178 / 7e-57 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G200200 [exp] 284 / 5e-94 AT5G22000 385 / 9e-133 RING-H2 group F2A (.1.2.3) Potri.016G066400 [exp] 283 / 2e-93 AT5G22000 386 / 4e-133 RING-H2 group F2A (.1.2.3) Potri.001G213800 [exp] 259 / 1e-84 AT5G22000 385 / 1e-132 RING-H2 group F2A (.1.2.3) Potri.010G092300 [exp] 140 / 1e-38 AT4G14220 248 / 6e-79 RING-H2 group F1A (.1) Potri.008G149300 [exp] 137 / 2e-37 AT5G22000 186 / 4e-55 RING-H2 group F2A (.1.2.3) Potri.001G101700 [exp] 66 / 2e-12 AT5G41350 142 / 2e-42 RING/U-box superfamily protein (.1) Potri.010G140300 [exp] 64 / 9e-12 AT5G38895 129 / 4e-37 RING/U-box superfamily protein (.1.2.3) Potri.014G087000 [exp] 64 / 9e-12 AT4G00335 222 / 2e-73 RING-H2 finger B1A (.1.2.3) Potri.003G129900 [exp] 63 / 2e-11 AT5G41350 146 / 6e-44 RING/U-box superfamily protein (.1) Potri.017G100100 [exp] 62 / 5e-11 AT5G15790 230 / 6e-76 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10029351 pacid=23139941 polypeptide=Lus10029351 locus=Lus10029351.g ID=Lus10029351.BGIv1.0 annot-version=v1.0 ATGGAGGAGGAAGGGAAGAAAGCTGCAGCGAAGATGACGTCAGCTGCAGCATTTGTGGAAGGAGGAATCCAGGATGAATGTGAGGATTCTTGTAGCATTT GTCTCGAGGAGTTTTCTTCAAATGATCCTTCAACGCTGACCAAATGCAGGCATGAATATCACCTCCAGTGCATTCTTGAATGGTGCCAGAGAAGCTCAGA CTGTCCAATGTGTTTGCAACCAGTTAGCTTGAAGGACCCTTCGAGTCAAGAACTATTTGAAGCAGTGGAGCAAGAGAGGAAAATCAGGACTGCTGCTATT CGAAATCCCACTGTGTTTCGTCGTCCAACTTTCGGAGACTTTGATTTGCAGCATGTTGGTTCAAGTAATGCTGCTCGACTCGAAGCACGAATTCTCCAGC ACTTAGCTGCCGCAGCAGCCATGGGGAGAACTCACTTTGGTAGTGGTAGAAGGGAAAGCCACAGAAGTGGTAATAGTAGGTCTGCTGCTGCAGCAACTCA ACATCGTCCACACTTGTTGGTATTCTCAAATGCAACATCCTCTGGACAAGTTGGACGAGAAAGCGAGCCAGCTGCCATCAATGGAGCTACTCCATCCACC CCTCTGGCAGGCTCCGGGGATGATGACTCCTCGCCACATCATGATCTCAGCTCGTATGCTCTCAGGCCTACGATTCGTTCCTCGAATGAACGGATTACTC CAAGTCCTGATACAGCAGGGCGATCAGAGTCGTTTTCGGAGTCTTTAAAAACCAGACTCAGTTCATTGTCAATGAGGTACAGAGAATCATTCTCAAGAAG CACAAGAGGGTGGACAGATAGGTTCTTCTCTAGAAGCAACTCCCTGTCAGGTATTGGCTCCGAAGTACAAAGAGAAGTCGATGCTGGACCTGATAGATCC GATTCGCCATCTTCTGCGGCTGCTGCAAATTCAGCCACCAGTTAA
AA sequence Show only first row Show all	>Lus10029351 pacid=23139941 polypeptide=Lus10029351 locus=Lus10029351.g ID=Lus10029351.BGIv1.0 annot-version=v1.0 MEEEGKKAAAKMTSAAAFVEGGIQDECEDSCSICLEEFSSNDPSTLTKCRHEYHLQCILEWCQRSSDCPMCLQPVSLKDPSSQELFEAVEQERKIRTAAI RNPTVFRRPTFGDFDLQHVGSSNAARLEARILQHLAAAAAMGRTHFGSGRRESHRSGNSRSAAAATQHRPHLLVFSNATSSGQVGRESEPAAINGATPST PLAGSGDDDSSPHHDLSSYALRPTIRSSNERITPSPDTAGRSESFSESLKTRLSSLSMRYRESFSRSTRGWTDRFFSRSNSLSGIGSEVQREVDAGPDRS DSPSSAAAANSATS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10029351 [exp]	0	1
AT3G55080			SET domain-containing protein ...		Lus10023469 [exp]	3.7	0.8236
AT5G61820			unknown protein		Lus10004249 [exp]	8.1	0.8798
AT2G39210			Major facilitator superfamily ...		Lus10033790 [exp]	13.8	0.8192
AT3G55250		PDE329	PIGMENT DEFECTIVE 329, unknown...		Lus10008788 [exp]	15.7	0.8667
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10042288 [exp]	21.6	0.8113
AT4G34880			Amidase family protein (.1)		Lus10025066 [exp]	22.4	0.7521
AT1G45230			Protein of unknown function (D...		Lus10009756 [exp]	25.0	0.8600
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10042345 [exp]	26.5	0.8523
AT1G54570			Esterase/lipase/thioesterase f...		Lus10033848 [exp]	27.9	0.7774
AT1G06820		CCR2, CRTISO	CAROTENOID AND CHLOROPLAST REG...		Lus10029347 [exp]	30.0	0.8183

Compare expression of checked genes

Lus10029351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.