Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35860 542 / 0 FLA16 FASCICLIN-like arabinogalactan protein 16 precursor (.1) AT5G06390 540 / 0 FLA17 FASCICLIN-like arabinogalactan protein 17 precursor (.1) AT3G52370 540 / 0 FLA15 FASCICLIN-like arabinogalactan protein 15 precursor (.1) AT3G11700 535 / 0 FLA18 FASCICLIN-like arabinogalactan protein 18 precursor (.1) AT5G05650 119 / 8e-32 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013604 [exp] 618 / 0 AT5G06390 619 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Lus10016194 [exp] 482 / 3e-168 AT3G11700 492 / 5e-174 FASCICLIN-like arabinogalactan protein 18 precursor (.1) Lus10021247 [exp] 290 / 7e-93 AT2G35860 301 / 8e-99 FASCICLIN-like arabinogalactan protein 16 precursor (.1) Lus10036111 [exp] 43 / 0.0003 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G200300 [exp] 558 / 0 AT5G06390 616 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.016G066500 [exp] 551 / 0 AT5G06390 620 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.010G244900 [exp] 513 / 1e-179 AT5G06390 580 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.008G012400 [exp] 512 / 4e-179 AT5G06390 577 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.019G008400 [exp] 374 / 4e-126 AT5G06390 414 / 5e-143 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.010G198250 [exp] 367 / 4e-124 AT5G06390 404 / 1e-139 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.012G006200 [exp] 366 / 4e-122 AT5G06390 400 / 4e-137 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.019G120800 [exp] 44 / 0.0001 AT5G60490 124 / 2e-34 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.019G121100 [exp] 43 / 0.0004 AT5G60490 168 / 2e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151366 [exp] 42 / 0.0005 AT5G60490 167 / 7e-51 FASCICLIN-like arabinogalactan-protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10029353 pacid=23139796 polypeptide=Lus10029353 locus=Lus10029353.g ID=Lus10029353.BGIv1.0 annot-version=v1.0 ATGGATCCACCCATCTATGGTGTCTCCATTTTCCTCCTCCTCATCCTCCTCATCTCCCCCCTCTCCGCCGCCGCATTACCCACCTCCACTTCCACTTCCC CCACCGGCGGCGGCGGCCAACAAATCAATTCTAACTCCGTCCTAGTGGCCCTCCTCGACTCCCACTACACAGAGCTCTCCGAGCTCATCGAAAAGGCCCT CTTACTCCCCCAATTAGAATCCACCGTCTCATCCCACAACCTCACCATCTTCGCCCCTCAAAACGACGCCCTCAACCGCCGTCTCGACCCTGAATTCAAA CGCTTCCTCCTCGAACCCCGCAATCTCAAATCCCTCCAAACCCTCTTACTCCACCACATCCTCCCTTCCCGGGTCGGATCCCCCGACTGGCCCCATTCCT CCTCCGCCGCCGTTAACCACCCATCTCTCTCCTCCCACCACCTCCGCCTCTCCACCCACCACCTCAGCCTCTCCACTTCCTCCGGCCAAAAACTCGTCGG ATCCTCCCACATCGTCAAACCTGACGACCTCACCCGACCAGACGGCGTCATCCACGGCATTAACCGCCTCCTCGTCCCTCAATCCGTACAAGAAGATTTC AACCGCCGGAGAAGCCTCAGATCCATCTCCGCCGTTCTCCCGGAGGGAGCTCCAGAAGTAGATCCAAGGACTCACCGGCTAAAAAAAGTTGCTCCGGCCG TCCCTGCCGGAGCTCCCCCTGTTCTTCCGATTTACGACGCTCTTTCACCAGGTCCTTCCCTAGCTCCGGCACCGGCGCCGGGGCCCGGAGGGCCCCACCA CCACTTCGACGGGCACACTCAGGTGAAAGATTTCATCCATACTCTATTACATTACGGCGGGTACAACGAAATGGCGGATATTCTCGTCAATTTGACATCT TTAGCTACCGAGATGGGCCGGCTGGTATCGGAAGGATATGTTCTGACGGTTCTGGCGCCGAACGATGAGGCGATGGCGAAGCTGACGACGGATCAATTGA GTGAACCGGGAGCTCCGGAGCAGATTATATATTATCATATTATACCTGAGTATCAGACGGAGGAGAGTATGTACAATGCGGTGAGGAGATTCGGGAAGGT GAAGTACGATTCTCTCCGGCTGCCGCATAAGGTTGTGGCTCAAGAGGCCGACGGGTCGGTGAAATTCGGGAGCGGTGACGTGTCGGGTTACTTGTTTGAC CCGGATATTTATACCGACGGGAGGATTTCGGTTCAGGGGATTGACGGGATTCTGTTTCCCGAGACGGAGTTGACGGAGGAGGAGACGGCGGTGAGGAAAC CGGCTGGTCCGGTTAAAGTCGTCACCAAGCAAAGAAGAGACAAGTGGGGAGGGTTAGATGTCAAAAAATTTTATGATGGAATTTTGTGGAAGCAAAATGC CAAGGCCGTGAAGGAAAGCGACGGCTTTTTTGCTTTTAGCGGGCTTGAATCCGTCGGTGGTGAGGAGAACTTACCCATCAAAGTCCTTTTCAAGAGTAAA AAGAACCCTAACAAATTGGAGGCGGGTCATCGTGGGTTGGCGGGTGATCATGAGGGTCAATTGCCATCCTCTTCCAACCTAGCCGGCTGGCAGGCCCGAA GAGTCCGGGCAATATTCAAGCTGAAGACCTAA
AA sequence Show only first row Show all	>Lus10029353 pacid=23139796 polypeptide=Lus10029353 locus=Lus10029353.g ID=Lus10029353.BGIv1.0 annot-version=v1.0 MDPPIYGVSIFLLLILLISPLSAAALPTSTSTSPTGGGGQQINSNSVLVALLDSHYTELSELIEKALLLPQLESTVSSHNLTIFAPQNDALNRRLDPEFK RFLLEPRNLKSLQTLLLHHILPSRVGSPDWPHSSSAAVNHPSLSSHHLRLSTHHLSLSTSSGQKLVGSSHIVKPDDLTRPDGVIHGINRLLVPQSVQEDF NRRRSLRSISAVLPEGAPEVDPRTHRLKKVAPAVPAGAPPVLPIYDALSPGPSLAPAPAPGPGGPHHHFDGHTQVKDFIHTLLHYGGYNEMADILVNLTS LATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNAVRRFGKVKYDSLRLPHKVVAQEADGSVKFGSGDVSGYLFD PDIYTDGRISVQGIDGILFPETELTEEETAVRKPAGPVKVVTKQRRDKWGGLDVKKFYDGILWKQNAKAVKESDGFFAFSGLESVGGEENLPIKVLFKSK KNPNKLEAGHRGLAGDHEGQLPSSSNLAGWQARRVRAIFKLKT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10029353 [exp]	0	1
AT3G46520		ACT12	actin-12 (.1)		Lus10016259 [exp]	2.0	0.8942
AT4G37820			unknown protein		Lus10019253 [exp]	4.2	0.8758
AT3G10290			Nucleotide-sugar transporter f...		Lus10042039 [exp]	4.2	0.8806
AT1G14020			O-fucosyltransferase family pr...		Lus10030437 [exp]	4.5	0.8770
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10029938 [exp]	4.6	0.8731
AT3G11700		FLA18	FASCICLIN-like arabinogalactan...		Lus10016194 [exp]	7.9	0.8817
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10041278 [exp]	8.7	0.8492
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Lus10028404 [exp]	10.4	0.8720
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10004702 [exp]	10.7	0.8763
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10023576 [exp]	11.3	0.8720

Compare expression of checked genes

Lus10029353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.