Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35880 185 / 4e-53 TPX2 (targeting protein for Xklp2) protein family (.1) AT2G25480 140 / 1e-36 TPX2 (targeting protein for Xklp2) protein family (.1) AT4G32330 137 / 2e-35 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) AT3G23090 110 / 2e-26 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT3G04630 108 / 3e-26 WDL1 WVD2-like 1 (.1.2.3) AT5G28646 103 / 2e-25 WVD2 WAVE-DAMPENED 2, TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT1G54460 102 / 1e-23 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G70950 88 / 2e-18 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G01710 49 / 5e-06 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT3G01015 44 / 0.0003 TPX2 (targeting protein for Xklp2) protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016193 [exp] 785 / 0 AT2G35880 181 / 7e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10002915 [exp] 153 / 1e-41 AT4G32330 228 / 2e-70 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10021223 [exp] 121 / 3e-30 AT3G23090 230 / 4e-73 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10022213 [exp] 121 / 9e-30 AT3G23090 220 / 2e-68 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10042543 [exp] 107 / 1e-25 AT1G54460 176 / 1e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10006563 [exp] 106 / 2e-25 AT1G54460 187 / 2e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10005533 [exp] 106 / 2e-25 AT1G54460 187 / 3e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10022003 [exp] 104 / 1e-24 AT1G54460 172 / 3e-51 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10002012 [exp] 94 / 9e-21 AT4G32330 141 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G200400 [exp] 289 / 6e-92 AT2G35880 168 / 1e-46 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.016G066600 [exp] 289 / 6e-92 AT2G35880 149 / 5e-40 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.006G254400 [exp] 159 / 3e-43 AT4G32330 288 / 2e-93 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.018G027500 [exp] 149 / 8e-40 AT4G32330 268 / 2e-85 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.008G162800 [exp] 127 / 2e-32 AT3G23090 214 / 1e-66 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.010G076200 [exp] 124 / 5e-31 AT3G23090 185 / 5e-55 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.005G055900 [exp] 113 / 2e-27 AT1G54460 207 / 4e-64 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.013G042800 [exp] 106 / 5e-25 AT1G54460 176 / 5e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G129300 [exp] 89 / 1e-18 AT1G70950 241 / 2e-72 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G113000 [exp] 87 / 1e-17 AT1G70950 147 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [flax] [poplar] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Lus10029355 pacid=23139789 polypeptide=Lus10029355 locus=Lus10029355.g ID=Lus10029355.BGIv1.0 annot-version=v1.0 ATGGAGTCTGAGAATTCAGGTGAATTGAAGCATGAAATTGTAGTGGTGGAGGTAACTAATCGTGAAATGGAACGGAATTCGGAGGTAGAGATCGTTGCTT CGAATGATGATGTACCAACTGATGATGCAAATGGAACTTCAGAGCATCATTCTACTGAAGCTGAAGGTCTTAATTTGATCGGTACTAAGGATGGAGAAGA TACACCACCGGTCTCGAAACCTCTAAAGGAGCATGGCGGTTTGAAAGCTCCGGCTACTGTAAAGAACAGAAAAGTTTCGAAGGACAAGGCTAACTTGAAA GGTTCCGGTTCGATTTCGCGCAAGGAAAGACCGGTGCTTTCTCAGAGCATGTCGTTTTCCGGGAGAGGAGTTCATGCTGATAAAATGAGGAGGAGTGTTG ATGGAACCCCTGGTGCCAAAAATGATTTAACACCTGTCCTGAATGAAGGCAAGAGATCTCGAGCGAATCTCAACAGATCGGCAACTTCCTTATCGCGTTC GAATCAAGCAAACAAGAGAGGTACTGCCGAGGTTGCGACGATGGAAGCTACTACTAGCAATGGTGTTAAAGCTCTCACAAGGCAGAAGTCTTCTGCAGCC AAACCCCGTAGCGTGCCTGTGAAATCAAATCCTCCTACTGAAGCAGAAGCCAAATCCCCCCCTCCAGCTGAGGTTGCTGAGTCCGCTGATCCAATCCTGA AGCCGATAGCCACATCGTCACCTATCAAAGAGGAAGACGACACTCATTCCAACGCGTCGGGTGCGACTACTCGAAGGACTTCTGCCTCTGGGTTCTCTTC GAGGTTAGAAGAACGTGCAGAAAAGAGGAAAGAGTTCTTATCAAAGCTGGAAGAGAAGATCCAAGCCAAGGAAGTCGAAAAGAGCACCTTGCAAGCAAAA TCTAAGGAGAGCCAGGAAGCTGAGATCAAACAGCTCCGGAAGAGCTTAACATTTAAGGCTGTACCTATGCCCACATTCTATAAGGAGCCGCCTCCGAAAG TTGAACTGAAGAAGATACCAACAACTCGACCAAGGTCACCAAAGCTCGGAAGAAACAAGAGCGCCATCACCACAACAAACAACTCTTCTGAAGACCGCCC CATTCTTGAACCGACCAAGTCCGCCAAGGATAGATACAGAACCAACGGTGTCAAGGACTTAGCTGCCTCAAAAACACATGTCAAGAAACCGGTCTCAAAA CTCCAGCCTCAAAGAGTTTCTACAACAACAATAACCAGTGAGCATGCTGTGAAGAAGACTGTAAAGTCCAAACCAAAGTCTGCATCTTTAGGTGGAGAGA CTAAACAACCCACAAAACCCATCACAGAGAAAATAGAAGAGAATCTGAGTAACGGTTCATCACCTAGCCTTCCACCATGTGACAATGGTGCAGATGTGCT GAACTCTGAGGAAAGAAGCCCCGATGCGGATGAGAGAACAGTTTCGAGCTCCGTGAACCCCGAGATTGTGCCTATTCAGGAAGAAGTGGCTGTGGTGGTT GGTGGATGA
AA sequence Show only first row Show all	>Lus10029355 pacid=23139789 polypeptide=Lus10029355 locus=Lus10029355.g ID=Lus10029355.BGIv1.0 annot-version=v1.0 MESENSGELKHEIVVVEVTNREMERNSEVEIVASNDDVPTDDANGTSEHHSTEAEGLNLIGTKDGEDTPPVSKPLKEHGGLKAPATVKNRKVSKDKANLK GSGSISRKERPVLSQSMSFSGRGVHADKMRRSVDGTPGAKNDLTPVLNEGKRSRANLNRSATSLSRSNQANKRGTAEVATMEATTSNGVKALTRQKSSAA KPRSVPVKSNPPTEAEAKSPPPAEVAESADPILKPIATSSPIKEEDDTHSNASGATTRRTSASGFSSRLEERAEKRKEFLSKLEEKIQAKEVEKSTLQAK SKESQEAEIKQLRKSLTFKAVPMPTFYKEPPPKVELKKIPTTRPRSPKLGRNKSAITTTNNSSEDRPILEPTKSAKDRYRTNGVKDLAASKTHVKKPVSK LQPQRVSTTTITSEHAVKKTVKSKPKSASLGGETKQPTKPITEKIEENLSNGSSPSLPPCDNGADVLNSEERSPDADERTVSSSVNPEIVPIQEEVAVVV GG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35880			TPX2 (targeting protein for Xk...		Lus10029355 [exp]	0	1
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10040199 [exp]	2.0	0.8478
AT1G61100			disease resistance protein (TI...		Lus10018471 [exp]	4.5	0.8129
AT2G42320			nucleolar protein gar2-related...		Lus10040502 [exp]	4.5	0.8307
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10000553 [exp]	7.3	0.8114
AT5G35570			O-fucosyltransferase family pr...		Lus10017171 [exp]	8.8	0.7960
AT1G78020			Protein of unknown function (D...		Lus10000693 [exp]	8.9	0.7805
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10002000 [exp]	9.3	0.8210
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10011215 [exp]	10.5	0.7996
AT1G21070			Nucleotide-sugar transporter f...		Lus10036606 [exp]	10.6	0.8185
AT1G78110			unknown protein		Lus10012052 [exp]	14.3	0.7532

Compare expression of checked genes

Lus10029355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.