Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02700 77 / 4e-15 F-box/RNI-like superfamily protein (.1) AT3G28410 76 / 6e-15 F-box/RNI-like superfamily protein (.1) AT5G02920 70 / 2e-13 F-box/RNI-like superfamily protein (.1) AT1G69630 67 / 8e-12 F-box/RNI-like superfamily protein (.1) AT3G18150 66 / 1e-11 RNI-like superfamily protein (.1) AT1G78760 66 / 2e-11 F-box/RNI-like superfamily protein (.1) AT5G56440 66 / 2e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G22720 63 / 2e-10 F-box/RNI-like superfamily protein (.1.2) AT4G00160 63 / 2e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G18780 63 / 2e-10 F-box/RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016192 [exp] 287 / 1e-94 AT3G26922 68 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10026190 [exp] 244 / 2e-77 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10042477 [exp] 240 / 4e-76 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024696 [exp] 223 / 4e-69 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10024695 [exp] 220 / 4e-68 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10002239 [exp] 218 / 1e-67 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1) Lus10001507 [exp] 218 / 2e-67 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10034161 [exp] 204 / 2e-62 AT1G66310 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10007058 [exp] 198 / 1e-59 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G337200 [exp] 122 / 1e-31 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G002100 [exp] 117 / 1e-29 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 117 / 3e-29 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G104200 [exp] 96 / 9e-22 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 94 / 7e-21 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 93 / 1e-20 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 58 / 6e-09 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.015G002001 [exp] 57 / 9e-09 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.012G099400 [exp] 56 / 4e-08 AT5G44950 77 / 1e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.017G146500 [exp] 54 / 9e-08 AT5G02920 64 / 2e-11 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10029357 pacid=23139880 polypeptide=Lus10029357 locus=Lus10029357.g ID=Lus10029357.BGIv1.0 annot-version=v1.0 ATGGCGGAGGAGAGCAACAACAACAACAACAACAACAACAGAGCTAGGAAAAGGCTTCTTCATCCTTCTTCTACTGACAGTGACAGGTTAAGCTATCTCC CGGACTCAGTTATTCATCACATACTTTCATTCCTCGATACAAAATTCGTAGTTCAGACTTCCGTTCTATCCCGACTGTGGAGATCCGTCTGGAAAAACGT TCCGGTCCTCAATTTCGACCGCCGGTCTTTCCAAGACTATCACAATTTCAGATGGTACGTGGACGGAGTTCTGTCGTTTCGAAGTCGGTTCACCCTAGAC GAGATCGTCTACATCGACAATGTAGATTCAGGGAAGAAAGGAGAAGCTAGCTTCCTGCCTCTAAAAGTTATTCAATATGGATTCTACCATGGTGTTAAGC GCTTAGCTCTCGACTTGGAATTCGATGCCACCATGGCGGATTGTTACACGTTTTCTGAGCTGTTTGGCTCGAAATCAAAAGACCGTTCCTTCGATCTCGA TCTCAAATCCCTACGGTTGTTAGGAATTGCCCTTGATGTCGGATTCGAATCATTTGGTTTTCAAACGCTGACTGATTTAGAGCTAATCGGGTGCAATCTC TTGTCTGGTAATCACGAGGTTTACAATCCGTTTGCTGGATTTCCATGCCTGAAGAATCTGGTACTAGATACTTGCCACAATGGTATTGGTAAGGATCAAT TCAAGAGATTTAGGGTTTCCGGACTCGAGCTGCTTCGAGTAAGACTTGTGTGTGTCGAACGTTGCGAGATCGAGATATTTGCACCGAAACTCGAATCCTT GACTCTTTGGAAGTTCGAGGAAGTTGAAGAGTTTTCAGAAATGACACTTCCATCCTTGCAACACGTTGATATTTGGATCACTAGGACGGAGTGCGATCTC GTTGCGAATGGGAACGAGTTTTTCGCATCGTTGTTCAAAAGTTTTGGCAGTGTGAAATGTATGACACTAAGATATGGAACCACAGAGGCACTCGGCCGGA TTTCTGAGTTTCTGGAACAACAACCTTCCCCCTTTACTAGACTGGAGAATCTAAATCTGGAATTGGAGTCCGACGAGGTACCTCGTACCGTGGTGAGTTA CTTTGTTAATGGATCTGCAGATTCTCGTATCAAGGTTTTGAAAGAATCCGGCGGCATCCAGTTTTCTGTACCAATTGAGATTCACTGA
AA sequence Show only first row Show all	>Lus10029357 pacid=23139880 polypeptide=Lus10029357 locus=Lus10029357.g ID=Lus10029357.BGIv1.0 annot-version=v1.0 MAEESNNNNNNNNRARKRLLHPSSTDSDRLSYLPDSVIHHILSFLDTKFVVQTSVLSRLWRSVWKNVPVLNFDRRSFQDYHNFRWYVDGVLSFRSRFTLD EIVYIDNVDSGKKGEASFLPLKVIQYGFYHGVKRLALDLEFDATMADCYTFSELFGSKSKDRSFDLDLKSLRLLGIALDVGFESFGFQTLTDLELIGCNL LSGNHEVYNPFAGFPCLKNLVLDTCHNGIGKDQFKRFRVSGLELLRVRLVCVERCEIEIFAPKLESLTLWKFEEVEEFSEMTLPSLQHVDIWITRTECDL VANGNEFFASLFKSFGSVKCMTLRYGTTEALGRISEFLEQQPSPFTRLENLNLELESDEVPRTVVSYFVNGSADSRIKVLKESGGIQFSVPIEIH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28410			F-box/RNI-like superfamily pro...		Lus10029357 [exp]	0	1
AT5G27860			unknown protein		Lus10020665 [exp]	15.1	0.7094
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10008685 [exp]	15.4	0.7227
AT1G27180			disease resistance protein (TI...		Lus10018658 [exp]	20.4	0.6959
AT2G34140	DOF	AtDof2. 3	Dof-type zinc finger DNA-bindi...		Lus10013905 [exp]	29.6	0.6995
AT4G03000			RING/U-box superfamily protein...		Lus10041246 [exp]	31.6	0.6649
AT3G56830			Protein of unknown function (D...		Lus10030290 [exp]	33.9	0.6929
AT5G44150			unknown protein		Lus10039868 [exp]	40.5	0.6386
AT1G27320		AHK3	histidine kinase 3 (.1)		Lus10015773 [exp]	45.4	0.6797
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10002597 [exp]	82.5	0.6519
AT1G27350			Ribosome associated membrane p...		Lus10011355 [exp]	89.5	0.6355

Compare expression of checked genes

Lus10029357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.