Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04870 672 / 0 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT3G10660 665 / 0 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT2G38910 629 / 0 CPK20 calcium-dependent protein kinase 20 (.1) AT4G35310 624 / 0 CPK5, ATCPK5 calmodulin-domain protein kinase 5 (.1) AT2G17290 617 / 0 ATCPK6, ATCDPK3, CPK6 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) AT4G38230 614 / 0 CPK26, ATCPK26 ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 26, calcium-dependent protein kinase 26 (.1.2.3) AT1G35670 596 / 0 CPK11, ATCDPK2, ATCPK11 calcium-dependent protein kinase 2 (.1) AT4G09570 594 / 0 CPK4, ATCPK4 calcium-dependent protein kinase 4 (.1) AT5G23580 560 / 0 ATCDPK9, CPK12, CDPK9, ATCPK12 CALCIUM-DEPENDENT PROTEIN KINASE 12, ARABIDOPSIS THALIANA CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9, calmodulin-like domain protein kinase 9 (.1) AT5G12180 550 / 0 CPK17 calcium-dependent protein kinase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021248 [exp] 742 / 0 AT3G10660 809 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10013603 [exp] 741 / 0 AT3G10660 803 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10008958 [exp] 673 / 0 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10028862 [exp] 670 / 0 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10015992 [exp] 633 / 0 AT2G38910 880 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10012285 [exp] 629 / 0 AT2G38910 884 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10022986 [exp] 625 / 0 AT4G35310 950 / 0.0 calmodulin-domain protein kinase 5 (.1) Lus10001384 [exp] 624 / 0 AT4G35310 949 / 0.0 calmodulin-domain protein kinase 5 (.1) Lus10013842 [exp] 620 / 0 AT2G17290 948 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066700 [exp] 709 / 0 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.006G200600 [exp] 708 / 0 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1) Potri.008G014700 [exp] 683 / 0 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.010G244800 [exp] 682 / 0 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.016G065700 [exp] 634 / 0 AT2G38910 892 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.004G207300 [exp] 632 / 0 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.009G168600 [exp] 628 / 0 AT2G17290 968 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.006G199400 [exp] 624 / 0 AT2G38910 899 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.T012800 [exp] 608 / 0 AT1G35670 795 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.019G083200 [exp] 605 / 0 AT4G09570 835 / 0.0 calcium-dependent protein kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10029358 pacid=23139964 polypeptide=Lus10029358 locus=Lus10029358.g ID=Lus10029358.BGIv1.0 annot-version=v1.0 ATGGACGATGTCGAGGATGTCAGGAGAGAGATCGAGATAATGCATCACTTGTCTGGACACCCTAACATCATCAGGATCAAGTCCGCCTTCGAGGACAGTG TCGCGGTCCATGTCGTGATGGAGCTTTGCTCGGGAGGCGAGCTTTTCGACAGGATCATCCAAAAGGGACATTACACCGAAAGGAAAGCTGCTGAGATCAC CAGGACAATTTTCGGAGTCGTGGAAGCCTGCCATTCTCTAGGAGTCATGCATCGGGATCTCAAGCCTGAGAATTTCCTCTTCATTGATGAGCATGAGGAT TCCCCTCTCAAGGCTATCGATTTCGGACTCTCGATATTCTTCAAGCCTGGGCAGATTTTCAACGATGTGGTTGGAAGTCCTTACTATGTCGCGCCGGAAG TTCTGAGGAAGAAGTATGGCCCTGAAGCTGATGTGTGGAGTGCTGGTGTAATGGTCTACATTCTGTTAAGTGGAGTGCCTCCATTTTGGGCTGGTAAGAA AGCTTGGGAGCCAAAGACTGAAGATGAGATCTTCCATGAAGTTTTGCATGGGAATCCGGACTTCACATCGGACCCTTGGCCTCACGTTTCCGACAGCGCC AAGGAGTTGGTAAAGAAAATGCTCGTTAGAGAACCGAATAAGCGAATAACCACCCACGAAGTTCTCTGCCATCCATGGGTTAGAGAAGATGGAGTGGCAC CAGACAAGCCACTTGACCCAGCTGTCTTAACACGTTTGAAACAATTTTCAGCCATGAACAAGCTAAAGAAGATGGCTTTAAGAATCATTGCAGAGAATCT GTCAGAAGAAGAGATTGCAGGGTTGAGAGAGATGTTCAGGATGATCGACACAGACAACAGCGGTACAATCACCTTCGAAGAGCTCAAAGTCGGACTCAAA ACCTTCGGTGCAAACCTTGACGAGTCAGAAATCTATGACCTCATGCAGGCTGCTGACATCAACAACAACGGGGCAATCGATTACCCCGAGTTCATAGCAG CGACTCTGCATCTAAACAAAGTCGAGAGGGAGGATCGTCTTCTGACAACCTTTTCATACTTCGATAAGGATGGAAGCGGATACATCACTCTAGATGAACT CCAACAAGCCTGCAACGAGTTTGGGATGAAGGCCGTTGAGTTGGAGGAGATGATTCGAGAAGTAGATAAGGATAATGATGGTCGCATAGATTATAACGAG TTCGTGGAGATGATGCAAACGAGTCACTCGGAAATCGGTTTGACCGGTAGAAATGTAGGTATTTCTTTTAGATAG
AA sequence Show only first row Show all	>Lus10029358 pacid=23139964 polypeptide=Lus10029358 locus=Lus10029358.g ID=Lus10029358.BGIv1.0 annot-version=v1.0 MDDVEDVRREIEIMHHLSGHPNIIRIKSAFEDSVAVHVVMELCSGGELFDRIIQKGHYTERKAAEITRTIFGVVEACHSLGVMHRDLKPENFLFIDEHED SPLKAIDFGLSIFFKPGQIFNDVVGSPYYVAPEVLRKKYGPEADVWSAGVMVYILLSGVPPFWAGKKAWEPKTEDEIFHEVLHGNPDFTSDPWPHVSDSA KELVKKMLVREPNKRITTHEVLCHPWVREDGVAPDKPLDPAVLTRLKQFSAMNKLKKMALRIIAENLSEEEIAGLREMFRMIDTDNSGTITFEELKVGLK TFGANLDESEIYDLMQAADINNNGAIDYPEFIAATLHLNKVEREDRLLTTFSYFDKDGSGYITLDELQQACNEFGMKAVELEEMIREVDKDNDGRIDYNE FVEMMQTSHSEIGLTGRNVGISFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10029358 [exp]	0	1
					Lus10018225 [exp]	4.9	0.9855
AT2G28085			SAUR-like auxin-responsive pro...		Lus10016130 [exp]	5.7	0.9558
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10028844 [exp]	7.3	0.9815
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Lus10020786 [exp]	8.5	0.9520
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	9.2	0.9797
					Lus10039897 [exp]	9.8	0.9380
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024077 [exp]	10.6	0.9797
					Lus10005830 [exp]	11.8	0.9797
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020083 [exp]	12.7	0.9298
AT3G63060		EDL3	EID1-like 3 (.1)		Lus10000659 [exp]	12.9	0.8929

Compare expression of checked genes

Lus10029358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.