Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06410 259 / 5e-87 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016189 [exp] 339 / 1e-117 AT5G06410 205 / 2e-65 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10033940 [exp] 141 / 1e-42 AT5G06410 106 / 8e-30 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10026975 [exp] 140 / 2e-42 AT5G06410 100 / 2e-27 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G200900 [exp] 290 / 2e-98 AT5G06410 253 / 3e-84 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF07743 [flax] [poplar] HSCB_C HSCB C-terminal oligomerisation domain
Representative CDS sequence Show only first row Show all	>Lus10029359 pacid=23139883 polypeptide=Lus10029359 locus=Lus10029359.g ID=Lus10029359.BGIv1.0 annot-version=v1.0 ATGTCGACGGTAAAGAAGCTAACTTCAGCAGCTCTGCCACAAATTCTTCTTCGGAGATCCCTCTCGTCGGCGACGACGACTTGTCCACCATTCTTTCATT CACCTCCCTCGCCGTTTCAACTCCCTTCTCCTTTCCCTGCCTCCACTTTCTCTAATCCCGCCACAGCTCACTTCCTCCTAAACCCTCGGATATTCCCCAG CAGTAGTTTTCTCTGCTCTCAATCTTCACCGCAAGTCAGTGATTCCTCAAGATGCTGGAATTGCAACGCTCATCCTGAACGAGGGTTGTTCTTGGTTTGC GATTCCTGCAGTGCAATCCAGCCAGTGGATCGCTCTCTGAACTACTTCCGATTATTCGGACTAGAGAAGAAGTATGAGATCGAGGATGGTAATTTGCACG ATAAGTATAAAGACTGGCAGAAGAAGTTACATCCTGATTTGGTTCATTCCAAGTCTGAGATGGAGAGGGAGTTTGCTCGAGAACAGTCAGCTAGAGTTGG GGATGCCTATCGCACGCTGGCCAATCCTCGTATTAGAGCAATGTACATTCTGAAACTTGTGGGTGTGGATGTGAATGAAGAAGAAACCATCTCAGACCCG GAGTTACTACTTGAGATAATGGAGATTAGAGAAGCTGTTGAAGACGCACCTGATTCTACAGCTCTTAACAAGATCCAATCTCAGCTAGAAGAAAAACTGC AGGTGTGGTCTAAATCCTTTGCCGACGCATTTAAAAGTAAGAATTTTGAAGAAGCCAAAGATTGCATCCGGAGAATGACCTACTATGACCGCGCAATCGA AGAAATTGTGAAGAGGCTTTGA
AA sequence Show only first row Show all	>Lus10029359 pacid=23139883 polypeptide=Lus10029359 locus=Lus10029359.g ID=Lus10029359.BGIv1.0 annot-version=v1.0 MSTVKKLTSAALPQILLRRSLSSATTTCPPFFHSPPSPFQLPSPFPASTFSNPATAHFLLNPRIFPSSSFLCSQSSPQVSDSSRCWNCNAHPERGLFLVC DSCSAIQPVDRSLNYFRLFGLEKKYEIEDGNLHDKYKDWQKKLHPDLVHSKSEMEREFAREQSARVGDAYRTLANPRIRAMYILKLVGVDVNEEETISDP ELLLEIMEIREAVEDAPDSTALNKIQSQLEEKLQVWSKSFADAFKSKNFEEAKDCIRRMTYYDRAIEEIVKRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06410			DNAJ heat shock N-terminal dom...		Lus10029359 [exp]	0	1
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10015541 [exp]	1.7	0.8320
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10033187 [exp]	2.4	0.7902
AT2G20410			RNA-binding ASCH domain protei...		Lus10042558 [exp]	7.5	0.7691
AT1G15810			S15/NS1, RNA-binding protein (...		Lus10010090 [exp]	7.6	0.7080
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10012139 [exp]	7.8	0.6873
AT4G36050			endonuclease/exonuclease/phosp...		Lus10028455 [exp]	8.4	0.7687
AT3G17900			unknown protein		Lus10013273 [exp]	8.8	0.7893
AT5G61220			LYR family of Fe/S cluster bio...		Lus10034706 [exp]	9.2	0.7300
AT4G33460		ABCI10, ATNAP13...	embryo defective 2751, ATP-bin...		Lus10002094 [exp]	16.8	0.6702
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10037917 [exp]	18.8	0.7545

Compare expression of checked genes

Lus10029359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.