Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09790 498 / 4e-175 COBL6 COBRA-like protein 6 precursor (.1) AT3G02210 477 / 7e-167 COBL1 COBRA-like protein 1 precursor (.1) AT3G29810 468 / 2e-163 COBL2 COBRA-like protein 2 precursor (.1) AT5G60920 455 / 3e-158 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G15630 445 / 1e-154 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G60950 134 / 5e-37 COBL5 COBRA-like protein 5 precursor (.1) AT4G16120 121 / 1e-29 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT5G49270 118 / 2e-28 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G20580 108 / 5e-25 COBL10 COBRA-like protein 10 precursor (.1) AT4G27110 107 / 1e-24 COBL11 COBRA-like protein 11 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007217 [exp] 650 / 0 AT1G09790 471 / 1e-164 COBRA-like protein 6 precursor (.1) Lus10016188 [exp] 578 / 0 AT1G09790 304 / 2e-101 COBRA-like protein 6 precursor (.1) Lus10012598 [exp] 467 / 3e-163 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1) Lus10034379 [exp] 459 / 7e-160 AT3G02210 685 / 0.0 COBRA-like protein 1 precursor (.1) Lus10034666 [exp] 459 / 1e-159 AT5G15630 627 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10017866 [exp] 453 / 1e-157 AT5G15630 625 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10021144 [exp] 452 / 3e-157 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10007986 [exp] 452 / 3e-157 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034670 [exp] 446 / 1e-154 AT5G15630 715 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G219200 [exp] 572 / 0 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.004G117100 [exp] 479 / 8e-168 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.015G060000 [exp] 454 / 1e-157 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060200 [exp] 449 / 2e-156 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060100 [exp] 446 / 5e-155 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117200 [exp] 424 / 1e-146 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098700 [exp] 421 / 1e-145 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.012G062200 [exp] 417 / 7e-144 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098600 [exp] 410 / 2e-141 AT5G60920 601 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G167100 [exp] 358 / 3e-120 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [flax] [poplar] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Lus10029360 pacid=23139974 polypeptide=Lus10029360 locus=Lus10029360.g ID=Lus10029360.BGIv1.0 annot-version=v1.0 ATGGCGGCCATGGGTTTAGTTTGGGTTTTGTTCTTCATCGTCATCATCGTCTTTTCTTCTCCTTCTTATGGGTATGATCCGCTAGATCCGGCAGCCAACA TAACGATCAAATGGGATCTGTTGGTCTCGTCCCCCGGCGTTAATAGCGTGAAGGTGTCAATACTGAACTACCAGCAATACAGGCACATAGAGGCGCCAGG GTGGAGGCTAGGGTGGGACTGGAAAGGCAAAGAGGCCATATCCGGCATGAACGGAGCTGAAGCTACTCAGCAAGGTGACTGCTCCAGATTCAAGGGCCAA CCCCCTCCTCATTGTTGCGATAAGCATCCCGTAATCGTCGATCTCTTGCCCGGAGCTCCCTACAATATGCAGTCTCAAAACTGCTGCAAAGGAGGAGTCC TCTCGTCCATGACACAGGACACATCCAACTATGCTTCCTCTTTCCAGATGACCGTCATCGGAGGAGGCTCCACAGACTCCGAGTTCGAAATGCCCGAGAA TTTCACCCTCGGATTGCCTGGATACACTTGTGGAAATGCTACATTAGTCAGTCCCACCAGGATCCCCTCCGATGGTGGCCGCCGGTGGACTCAAGTCCTC AAGACTTGGAAAACAATATGCAGCTACTCACTGTTCATAGCATCACCTTCTCCAAAATGTTGTGTTTCATTGTCAGCTTTCTACGACAGTACAATAGTTC CTTGCACAAAATGTAGCTGTGGGTGTCAAGGGGCCCACCGTGGAGCTAAATGTGCCAAGGTGTCGGAGAAGGTATCGGTTCTGCAACAAAGGCACGATCC AACAGTAGAGCCACCGCCATTCGTGAGATGCACAGAGCATATGTGCCCGGTACGGATCCATTGGCACGTAAAAGAGAGTTACAAGCAGTATTGGAGAGTG AAGATGACCATCACTAACTTCAACCTCATCAAGAACTACTCTGAGTGGAACTTAGTGATCCTGCATCCGAATTTGAAGAACATCACTCAAGTGTTCAGCT TTAACTACGCCCCCCTCGACAAGTTTCGCTACACCAATGACAGTGGGATGTTCTGGGGGGTGAAATTCTACAACGACGTGCTGTTGCAAGAAGGAGAGAG CGGGAATGTTCAGAGCGAGATGCTGCTGGCGAAAGAGGCGGGGATGTTTAGTTTCGGGGAAGGATGGGCTTTTCCGAGGAGGATTTTGTTCAATGGAGAT GAATGTGTAATGCCATCTCCAGATAACTATCCAAGGCTCCCTAATACATCTCCTCCACTAATTTCCTCTTCCGTTCTGTCCTTAATCTCCGTTTTTCTCT TCTTCTGCTTCTTGATTGATTGA
AA sequence Show only first row Show all	>Lus10029360 pacid=23139974 polypeptide=Lus10029360 locus=Lus10029360.g ID=Lus10029360.BGIv1.0 annot-version=v1.0 MAAMGLVWVLFFIVIIVFSSPSYGYDPLDPAANITIKWDLLVSSPGVNSVKVSILNYQQYRHIEAPGWRLGWDWKGKEAISGMNGAEATQQGDCSRFKGQ PPPHCCDKHPVIVDLLPGAPYNMQSQNCCKGGVLSSMTQDTSNYASSFQMTVIGGGSTDSEFEMPENFTLGLPGYTCGNATLVSPTRIPSDGGRRWTQVL KTWKTICSYSLFIASPSPKCCVSLSAFYDSTIVPCTKCSCGCQGAHRGAKCAKVSEKVSVLQQRHDPTVEPPPFVRCTEHMCPVRIHWHVKESYKQYWRV KMTITNFNLIKNYSEWNLVILHPNLKNITQVFSFNYAPLDKFRYTNDSGMFWGVKFYNDVLLQEGESGNVQSEMLLAKEAGMFSFGEGWAFPRRILFNGD ECVMPSPDNYPRLPNTSPPLISSSVLSLISVFLFFCFLID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10029360 [exp]	0	1
AT4G31680	B3	REM8	Transcriptional factor B3 fami...		Lus10010080 [exp]	3.5	0.8945
AT4G09570		CPK4, ATCPK4	calcium-dependent protein kina...		Lus10009427 [exp]	3.5	0.9087
AT5G14130			Peroxidase superfamily protein...		Lus10012540 [exp]	4.2	0.8432
AT5G43360		PHT1;3, ATPT4, ...	PHOSPHATE TRANSPORTER 3, phosp...		Lus10011826 [exp]	5.2	0.8964
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10011875 [exp]	5.5	0.8930
AT2G46890			Protein of unknown function (D...		Lus10010291 [exp]	9.5	0.8976
AT5G43350		PHT1;1, ATPT1	ARABIDOPSIS THALIANA PHOSPHATE...		Lus10021191 [exp]	14.1	0.8617
AT3G18280			Bifunctional inhibitor/lipid-t...		Lus10013030 [exp]	14.3	0.8906
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10007640 [exp]	15.9	0.8807
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10024584 [exp]	20.1	0.8494

Compare expression of checked genes

Lus10029360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.