Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06440 330 / 2e-107 unknown protein AT3G11720 288 / 2e-90 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016186 [exp] 800 / 0 AT5G06440 306 / 1e-98 unknown protein Lus10029362 [exp] 380 / 2e-128 AT5G06440 348 / 3e-117 unknown protein Lus10021251 [exp] 375 / 2e-122 AT5G06440 372 / 3e-122 unknown protein Lus10013601 [exp] 375 / 2e-122 AT5G06440 370 / 2e-121 unknown protein Lus10016185 [exp] 137 / 1e-36 AT3G11720 136 / 1e-37 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G201000 [exp] 394 / 3e-129 AT5G06440 390 / 6e-129 unknown protein Potri.016G067000 [exp] 394 / 4e-128 AT5G06440 370 / 6e-120 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029361 pacid=23139876 polypeptide=Lus10029361 locus=Lus10029361.g ID=Lus10029361.BGIv1.0 annot-version=v1.0 ATGGAGAAGGGTACAGAAAAGGGATCAAATTCTCGAAAAGACGGTGGTTGCATCGAACTGCAGCTGATTTATAGCTCAGAGTACTACATGAAAATGGAAG AGCTGTGGAGGGGACTTCACATGATTCCATGGAAGCGTGCAGGACTATATCAGGTTTGGAGTGTGGGAGAAATGGACAAGGATGGGAAGTTTTATGAGTA CAGGCAGAGACTGGACAAGACGCTGGCTTCTCCTGAGTTAACAGATCTTGATGCACTCAAAGCCCTCATTAGCAAGCAGCTCCAAGGATCGAACGAGGAA GTGTTGGAGAAAAGGGCTACTGAGGCATCCGATTTTCTTGATATGCTGAGGAGTGCTGCTGTAAGTGGAACCGAGTATTCGAGCAAGACCAAAGCAGCAT CAGTAGGGGAATGGAATTTGAAAGAAAGTAACGAAGAGTATCGTGTCATGTATCGCAAAGGACCCCAGGGTACACCTATGCATACACTGTTTGTCGAAGG TTATGTAGACGGACCTATTGAATCATGTTTATGCATTGGTTGGGAGACCACTCTCTACAACAAATGGTGGCCACAGCCTAAGTTCCCTAACTTCAAGATT TCTATGTCCAAAAGCTTACAGAAAGTTCAATTTGGGGAGCAGGTTTCTCTACTGAGGGTGAAAATTACATGGCCACTGTCAGCAAGGGAGATTGTTCTGC ATTATTTCATGTTTGAGTATCTCCAAGAGGGTCTGGTTGTTGTTCTTCTGAATTCGATCTCGGATTCAGAAAACCTGGATGTAACCACTCATGGTTTCAC CAGAGAGGGAATCCCTGAACCTGTGGAAGTAGTAAGAATAGACTTGGTGGGAGGATTCGCCGTGCAGGGAGTCAACTCCGAGCGAAGTTATGTATGCCTC ATAGGGAACATTGATTTCAAGCTGGATTTGGTGCCTTCATCACTTATAAACTTTGTGGCAAGGCAGGTCATTGGTGGCGGCTACAAACTGTATCAAAAGG CAGTGGTCTCTACATCTAAACGCGACGAGGACTATGTCAAGGCCTTGAAGGATCCAATGTATGCTAGGCTACGCAATATCTTCCACGACTCCTCAAGTAA CGACCCACGTGACATTAAACTACCAGAGGATGCTCATAGCGAACACCACACAGATGATCAAAATGTCATCATGGATGACAAGGATGATCATGCTGATGCC AAAGAAGAAACGAGCAAACCGTTGAACGATGGAGCTACTAATGACAGTAACATGCCATCATCATCACATGAAGTTGACTCTGAAGATGAATATGAACAGA AATTTCATCACCAGTATGGAGCTCTCCCAATCTGTCCCGACATAATACTAGCATTCTCTTCGTTGGAGAGAGCTACATCGTCGGTCAAGAGATATGGAGT CAATGTGTTGACCAGGTCATTCTCCAGAGTAGTTGTCGCTAACCCGGATGCTCCGATGGAAGAAGATAAGACTCTAAAGTTGGAAGCAACCCTTTCGAAA GATGGAGGTGTTGAAGGCATTGCTGATCATGAAGTAGTATCTGATAGCTTGATGGAGAATGCTCCTGCTCCCATAAAGTGTTCTCCTCGCAACTACAAAA GGTATAAAAAATTTGCACTTGACATGGTTTGCAGAATCCAAGATTGTGTGATATTGTTCAGTTTTGCAGTTGGGACGAATCAGGATTGA
AA sequence Show only first row Show all	>Lus10029361 pacid=23139876 polypeptide=Lus10029361 locus=Lus10029361.g ID=Lus10029361.BGIv1.0 annot-version=v1.0 MEKGTEKGSNSRKDGGCIELQLIYSSEYYMKMEELWRGLHMIPWKRAGLYQVWSVGEMDKDGKFYEYRQRLDKTLASPELTDLDALKALISKQLQGSNEE VLEKRATEASDFLDMLRSAAVSGTEYSSKTKAASVGEWNLKESNEEYRVMYRKGPQGTPMHTLFVEGYVDGPIESCLCIGWETTLYNKWWPQPKFPNFKI SMSKSLQKVQFGEQVSLLRVKITWPLSAREIVLHYFMFEYLQEGLVVVLLNSISDSENLDVTTHGFTREGIPEPVEVVRIDLVGGFAVQGVNSERSYVCL IGNIDFKLDLVPSSLINFVARQVIGGGYKLYQKAVVSTSKRDEDYVKALKDPMYARLRNIFHDSSSNDPRDIKLPEDAHSEHHTDDQNVIMDDKDDHADA KEETSKPLNDGATNDSNMPSSSHEVDSEDEYEQKFHHQYGALPICPDIILAFSSLERATSSVKRYGVNVLTRSFSRVVVANPDAPMEEDKTLKLEATLSK DGGVEGIADHEVVSDSLMENAPAPIKCSPRNYKRYKKFALDMVCRIQDCVILFSFAVGTNQD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06440			unknown protein		Lus10029361 [exp]	0	1
AT4G31805			WRKY family transcription fact...		Lus10007445 [exp]	2.6	0.8683
AT3G03560			unknown protein		Lus10020297 [exp]	9.3	0.8500
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Lus10031768 [exp]	13.7	0.7950
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10003892 [exp]	26.7	0.8107
AT1G15030			Protein of unknown function (D...		Lus10031598 [exp]	28.4	0.8334
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10032849 [exp]	28.7	0.8307
AT5G37290			ARM repeat superfamily protein...		Lus10008435 [exp]	32.6	0.8388
AT5G35180			Protein of unknown function (D...		Lus10019068 [exp]	34.9	0.8027
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10009958 [exp]	36.4	0.7917
AT4G31150			endonuclease V family protein ...		Lus10000685 [exp]	40.6	0.8183

Compare expression of checked genes

Lus10029361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.