Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06440 348 / 2e-117 unknown protein AT3G11720 301 / 3e-98 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021251 [exp] 538 / 0 AT5G06440 372 / 3e-122 unknown protein Lus10013601 [exp] 527 / 0 AT5G06440 370 / 2e-121 unknown protein Lus10029361 [exp] 380 / 9e-129 AT5G06440 331 / 8e-108 unknown protein Lus10016186 [exp] 355 / 3e-119 AT5G06440 306 / 1e-98 unknown protein Lus10016185 [exp] 325 / 2e-111 AT3G11720 136 / 1e-37 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G201000 [exp] 451 / 9e-155 AT5G06440 390 / 6e-129 unknown protein Potri.016G067000 [exp] 446 / 3e-151 AT5G06440 370 / 6e-120 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029362 pacid=23139797 polypeptide=Lus10029362 locus=Lus10029362.g ID=Lus10029362.BGIv1.0 annot-version=v1.0 ATGGATAAGAAAGGTGAAATCTCGCTGTATAGAGCGAGGTTGGACAAGTCTTTGGCATCTCCTGAGCTGACAGAACATGGAGCTCTTAAATGCCTAGTAA GAGATCAAATGCTACAGTCTAGACTTGATGAAAGTGAAGCTTGTAGTGAGAAGCTGCTGGAGAAAAGGACTGCTGAAGTGTCGAACTTTCTTGGCATGTT GAGGAGTGCTTCAAATGGCGGGAAAGAATCACTGAAGAATAATGAGCCATCTTCTGGTGAATGGAAAGTGAAAGAAAGTAACAAAGAGTACCGTGTTATG TACCGCCCGGGACCTAAAGGCAGCCCCTTTCATTCATTACTTGTGGAAGGATATGTAGATGGGCCTGTTGATGCATGTTTATGCATCGGTTGGGAGTCAG CTTTGTACAGGAAATGGTGGACACAGGTGATTATGCCTCCTTTCAAGATTTCAGCCTGCAAATGCTTGAAAAGGGTTCGTATAGGCGAGCAGATATCTTT AGTGAGGGTGAAGGTTTGGCCACTGCAATCTAGAGAGGCTATAATTCACTACGTGTTATTTGAGTACCTGAAGGAGGGGATAATTATTGTTCTTATGAAT ACGGTCCCTGATTTGGAGACCATTGATGTAAATACTCATGGATTTACCAAAGATGGAATACCTGCAGCTCAGGATGTGGTAAGAGCTGATTTGGTGGGTG GATTTGCTTTACAGAAGGTTACTTCGACGAGAAGTTACTTCCGGACTATTGCTGGCGTGGACCTGAAGTTTGACTTCATTCCTCCAGCTCTGATTAATTT TATCTCAAGACAGCTCATTGGAAGTGGTTTCGAACTATATCAGAAGGCAGTGACTACCTTATATAAGGATGATGAAGACTATGTCCAGGCACTGGCAAAT CCGTTCTACGCTCGAATGCGAGAGGCTATCTATGCTACTGATGATGTGGACGAGTCTTTACCGGAGAGAGGATATACAACAGAACAGAAAGTAGATGAGA CTGAAGGATATAGTCAATCTTCTGACAAAGGTATTGGTCAACCTCCTGCTTTGACAGAACGACGGTTCAAATTCTCAAAAAGGGTTCTGTAA
AA sequence Show only first row Show all	>Lus10029362 pacid=23139797 polypeptide=Lus10029362 locus=Lus10029362.g ID=Lus10029362.BGIv1.0 annot-version=v1.0 MDKKGEISLYRARLDKSLASPELTEHGALKCLVRDQMLQSRLDESEACSEKLLEKRTAEVSNFLGMLRSASNGGKESLKNNEPSSGEWKVKESNKEYRVM YRPGPKGSPFHSLLVEGYVDGPVDACLCIGWESALYRKWWTQVIMPPFKISACKCLKRVRIGEQISLVRVKVWPLQSREAIIHYVLFEYLKEGIIIVLMN TVPDLETIDVNTHGFTKDGIPAAQDVVRADLVGGFALQKVTSTRSYFRTIAGVDLKFDFIPPALINFISRQLIGSGFELYQKAVTTLYKDDEDYVQALAN PFYARMREAIYATDDVDESLPERGYTTEQKVDETEGYSQSSDKGIGQPPALTERRFKFSKRVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06440			unknown protein		Lus10029362 [exp]	0	1
AT4G35140			Transducin/WD40 repeat-like su...		Lus10025088 [exp]	4.9	0.7171
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Lus10021021 [exp]	7.1	0.7452
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Lus10022034 [exp]	8.4	0.7097
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Lus10031190 [exp]	15.2	0.7111
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10008878 [exp]	15.3	0.6803
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Lus10018689 [exp]	16.2	0.6833
AT3G57630			exostosin family protein (.1.2...		Lus10026311 [exp]	16.6	0.6543
AT1G06990			GDSL-like Lipase/Acylhydrolase...		Lus10025957 [exp]	16.7	0.6907
AT1G77800			PHD finger family protein (.1....		Lus10024778 [exp]	22.4	0.7096
AT2G17280			Phosphoglycerate mutase family...		Lus10032820 [exp]	25.7	0.6348

Compare expression of checked genes

Lus10029362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.