Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54540 1015 / 0 ABCF4, ATGCN4 ATP-binding cassette F4, general control non-repressible 4 (.1) AT5G60790 428 / 9e-142 ABCF1, ATGCN1 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) AT1G64550 431 / 3e-141 SCORD5, AtGCN20, AtABCF3, ABCF3, ATGCN3 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) AT5G64840 215 / 4e-60 ABCF5, ATGCN5 ATP-binding cassette F5, general control non-repressible 5 (.1) AT5G09930 208 / 1e-57 ABCF2, ATGCN2 ATP-binding cassette F2, ABC transporter family protein (.1) AT3G28390 81 / 3e-15 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28345 77 / 4e-14 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT2G36910 76 / 7e-14 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT3G28415 74 / 3e-13 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT5G46540 73 / 5e-13 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016184 [exp] 1231 / 0 AT3G54540 1141 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Lus10028810 [exp] 433 / 1e-143 AT5G60790 1013 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10038681 [exp] 432 / 4e-143 AT5G60790 1021 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10032431 [exp] 426 / 3e-139 AT1G64550 1244 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10023043 [exp] 427 / 6e-133 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10037947 [exp] 407 / 2e-132 AT5G60790 990 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10006804 [exp] 215 / 4e-60 AT5G64840 1050 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10005798 [exp] 215 / 4e-60 AT5G64840 1049 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10000013 [exp] 182 / 2e-54 AT3G54540 172 / 8e-52 ATP-binding cassette F4, general control non-repressible 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G254400 [exp] 1065 / 0 AT3G54540 1049 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Potri.008G003300 [exp] 1055 / 0 AT3G54540 1060 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Potri.004G214300 [exp] 438 / 2e-145 AT5G60790 944 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Potri.001G087300 [exp] 440 / 8e-145 AT1G64550 1145 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Potri.009G007800 [exp] 430 / 2e-142 AT5G60790 955 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Potri.007G080600 [exp] 213 / 3e-59 AT5G64840 936 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.005G084800 [exp] 203 / 6e-56 AT5G64840 983 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.016G093600 [exp] 77 / 4e-14 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.006G123900 [exp] 76 / 7e-14 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.014G113200 [exp] 75 / 2e-13 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10029363 pacid=23139856 polypeptide=Lus10029363 locus=Lus10029363.g ID=Lus10029363.BGIv1.0 annot-version=v1.0 ATGGTGAGGAAGAAGTCGGAAGAAGCTGGCGGTGCAGGGAAAGGAAAAGCAGCTAGCAAAGATGCATCTACAGCAGGGAAGAAACCTGAGAAATTATCAG TATCCGCCATGTTAGCTAGTATGGATCAGAAGGCTGATGCCCCTACAAAGAAAGGACCTTCCACCAGTAAGCCGAAAGCAAAAGCAAAGCAGAAAGCTCA AGCTCAAGCGTATACTGACGGCATCGATCTCCCTCCATCTGACGATGAGGAGGATGGATATCCGTCAGGCGAAGAGGAGAAGCCGAGTGATCGGAGATCG AATGTACTGAAGCCGATCGAGGCTTCTGTGACCGAGAGGGAGTTGAAGAAGAGGGAGAAGAAGGAACAACTGGCTGCTTATGCTGCTGAGGTAGCGAAGA AGGAGGCTCTCAGGGATGATCATGATGCGTTCACTGTTGTGATCGGTAGCCGTGCTGCTGTCCTTGCTGGGGAAGAGGACGCTGATGCAAATGTGAAGGA TATTTCGATAGAGAACTTTTCTGTTTCGGCTAGAGGGAAGGAGCTGTTGAAGAATACTGAAGTGAAGATATCTCATGGGAAGAGGTATGGGTTGGTTGGA CCGAACGGGATGGGGAAATCTACTCTTTTGAAGCTTCTTGCTTGGAGAAAGATTCCTGTTCCGAAGAACATTGATGTGTTATTGGTCGAGCAGGAGGTAG TTGGTGATGATAAATCTGCTTTGCAAGCAGTTGTTTCTGCAAACGAAGAGCTTGTCAAGCTAAGGCAAGAAGTAGACTCGTTACAGAAGTTATCTGCTGG GGATGAGAATGGTGATGATCAGGATGATGCAGGAGAGAAGCTTTCTGAATTATATGACAAATTGCAGCTGATGGGGTCAGATGCTGCTGAAGCTCAAGGA TCAAAGATTCTAGCTGGATTAGGGTTCACCAAAGATATGCAAGCTCGTCCAACTCGGTCCTTTAGTGGTGGTTGGAGGATGCGAATTTCTCTTGCTAGGG CTCTTTTCGTGCAGCCAACTCTATTGTTGCTTGATGAGCCTACCAACCATCTCGATCTTCGTGCCGTCCTGTGGCTGGAAGAGTACTTATGCAGATGGAA GAAAACTTTAGTGGTTGTCTCGCACGATAGAGATTTCCTTAATACTGTTTGTAGCGAGATCATTCATCTGCACGACTTTAAGCTCCAGATATACCGTGGG AACTTCGATGACTTTGAAGTTGGATATGAACAGAGAAGAAAAGAACAGAATAAGAAGTATGAGAATTATGAGAAGCAGATGAGAGCTGCCAAGAGGAGTG GTAGTAGAGTTCAGCAAGAAAAAGTCAAAGACCGAGCGAAATTCAATGCGAATAAAGACGCGTCCAAGAGTCGATCCAAGGGGAAAGTAGTAGATGACGA CGAAGTGGCTCCAGAAGCTCCGACGAAATGGAGAGATTACAGTGTCGAGTTCCACTTCCCTGAACCTACCGAGCTCACTCCTCCGCTGTTGCAGCTTATC GAAGTGAGCTTCAGCTATCCAAACCGGCCTGATTTCAGGCTGTCGAATGTTGATGTGGGTATCGATATGGGAACTCGTGTCGCTATAGTCGGTCCGAATG GAGCAGGGAAATCCACCTTACTCAACCTACTCGCTGGTGACTTGGTCCCTACCGAGGGCGAGTCGAGAAGAAGTCAGAAGCTGAGAATTGGGAGGTACTC GCAACATTTCGTCGACCTCTTAACTATGGATGAAACGCCTGTTCAGTATCTTCTCCGGCTGCATCCGGAGCAAGAAGGGTTCAGCAAGCAAGAGGCTGTT CGTGCAAAGCTCGGCAAGTACGGCCTACCTAGCCACAACCATCTTACACCAATCGCGAAACTTTCCGGTGGCCAGAAAGCTCGAGTTGTCTTTACGTCGA TATCCATGTCAAAGCCTCACATTTTGTTGCTGGATGAGCCCACCAACCATCTGGACATGCAGAGCATCGACGCGCTGGCTGATGCGCTTGATGAATTCAC CGGAGGAGTTGTTTTGGTTAGTCACGACTCGAGGCTGATATCGAGGGTGTGCGAGGATGAAGAGAAGAGTTTGATCTGGGTTGTGGAAGATGGAACTGTC AAGGTCTTCCCCGGGACGTTTGATGAGTACAAGGAGGAACTACAAAGAGAGATCAGAGCTGAGGTTGATGATTGA
AA sequence Show only first row Show all	>Lus10029363 pacid=23139856 polypeptide=Lus10029363 locus=Lus10029363.g ID=Lus10029363.BGIv1.0 annot-version=v1.0 MVRKKSEEAGGAGKGKAASKDASTAGKKPEKLSVSAMLASMDQKADAPTKKGPSTSKPKAKAKQKAQAQAYTDGIDLPPSDDEEDGYPSGEEEKPSDRRS NVLKPIEASVTERELKKREKKEQLAAYAAEVAKKEALRDDHDAFTVVIGSRAAVLAGEEDADANVKDISIENFSVSARGKELLKNTEVKISHGKRYGLVG PNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKSALQAVVSANEELVKLRQEVDSLQKLSAGDENGDDQDDAGEKLSELYDKLQLMGSDAAEAQG SKILAGLGFTKDMQARPTRSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCSEIIHLHDFKLQIYRG NFDDFEVGYEQRRKEQNKKYENYEKQMRAAKRSGSRVQQEKVKDRAKFNANKDASKSRSKGKVVDDDEVAPEAPTKWRDYSVEFHFPEPTELTPPLLQLI EVSFSYPNRPDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPTEGESRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPEQEGFSKQEAV RAKLGKYGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSLIWVVEDGTV KVFPGTFDEYKEELQREIRAEVDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Lus10029363 [exp]	0	1
AT5G19130			GPI transamidase component fam...		Lus10032125 [exp]	3.2	0.9091
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10016124 [exp]	3.5	0.9073
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10036805 [exp]	3.5	0.9137
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025336 [exp]	3.7	0.9061
AT5G08680			ATP synthase alpha/beta family...		Lus10035263 [exp]	5.0	0.9235
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10022559 [exp]	8.1	0.9118
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10002844 [exp]	9.6	0.9101
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10036999 [exp]	10.5	0.8984
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10014435 [exp]	13.6	0.9024
AT3G08640			Protein of unknown function (D...		Lus10003242 [exp]	14.1	0.9007

Compare expression of checked genes

Lus10029363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.