Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11760 704 / 0 unknown protein AT5G04860 540 / 0 unknown protein AT2G10560 237 / 6e-73 unknown protein AT2G25460 122 / 9e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016183 [exp] 1181 / 0 AT3G11760 771 / 0.0 unknown protein Lus10021254 [exp] 906 / 0 AT3G11760 793 / 0.0 unknown protein Lus10013598 [exp] 875 / 0 AT3G11760 759 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G201200 [exp] 799 / 0 AT3G11760 818 / 0.0 unknown protein Potri.016G067600 [exp] 791 / 0 AT3G11760 803 / 0.0 unknown protein Potri.010G244100 [exp] 675 / 0 AT3G11760 657 / 0.0 unknown protein Potri.008G015700 [exp] 654 / 0 AT3G11760 665 / 0.0 unknown protein Potri.018G027200 [exp] 327 / 4e-103 AT3G11760 327 / 5e-103 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029364 pacid=23139811 polypeptide=Lus10029364 locus=Lus10029364.g ID=Lus10029364.BGIv1.0 annot-version=v1.0 ATGGTGGTGAAGATGATGCGGTGGCCGTGGCCGCCTTTAGTGTCCAAGAAATTCGACGTCACTCTTGTCGTCAAGAGATTGGAAGGGCTGGATCTAGCCG CCGGAGAGAAATTGACGGTGGAGATCCGCTGGAAAGGCCCCAAATTTGCTCTTGGCTCTTTCCGGCGGAGGGTTAAAAGAAGCTTCACTCAAGAAGCGGC GGCGGCGGCGGTATTCGGGGATGGCTCTCTTTCTTCCTCCGATGAGGAAACCGGCACCGGCAACGAAGGCGGCGTGACAGCGGAGTGGAATGAGGAGTTT CAGAATATCTGTGCTTTGTCGCCTTACAAAGAGAACGCCTTCCACCCGTGGGAGATCGCTTTCTCCGTTTTCAACGATATGAACCAAGTGCCAAAGAAGA AAGTGTCTCCAATGGGAACAGCATTGCTCAACCTTGCCGAATTTGCCTCTAGAGCTGGAGAGGATCAGTTCGAATTGAGCCTCCCTCTCGTCCCTGGTAC CGATTGCCATGCCTCGCTTTTGATATCACTCAGCTTGTTGGAACTACGAATCACTCCCGAAACGATGATTCCTGTCACATTGTCTTCGCCTCGATCAGCT GAACCTGTCGCGAACGGGAAGGAGGAGGTCTCGGCGATTAAAGCCGGTCTAAGAAAGGTTAAGATTTTCAAGGACTATGTATCGATCCAGAGGGTGAAGA AGAAGCCCTACCGCGAGGAAGAAGGTGGTAGTGAAGGAAGGTCTTCTTCCAGGAGTGAAGATGGAGAGTATAACTACTACCCCTTCGACTCGGATTCACT AGATGATTTCGAGCAAGGAGAATCGGACGAGGTCCCTAGTGTTAGGAAGTCTTTCAGCTACGGTTCGCTAGCTTATGCTAATGGCCTCGGTGGATCGTCC TATTACAATGTTGGAAGAAATGATCTTGATGAGGATTGGGTTTACTACAGCAACCGTAAATCGGACGTGGGAAGCTCCTCCCAAATTAGCGATATCGATC CCTCTGTATCCGAACCGCCGCCACCACCACCACCGCAACTGCAAAGTAAAGGAGAGCCGTTGTTGAAGAAGACTTATGGCGAAGAAGGTGGCGATGATAT CGATTTCGACCGTCGACAGCTTAGTTCTGACGAAGCTCGGCGAAAGGCGGAGGGGGATTCATCTGCGAACAGGTCATCCATGTCCGATTTCGGAGACGAT AGCTTTACTGTCGGGAGTTGGGAGCAGAAAGAAGTAGTGAGCCGGGACAGGAACATGAAGCTTCTAGCCGAAGTCTTTTTTGCTTCGATCGATCAACGGA GCGAAAGGGCAGCTGGCGAGAGTGCTTGCACAGCTCTCGTGGCTGTGATTGCCGACTGGTTCCAGTGCAACCGCGACGCTATGCCTGTAAAGTCGCAGTT CGACAGTTTGATTCGTGACGGATCGCTAGAATGGAGGAACCTCTGCGAGAACGAAACGTACATGGAGCGGTTTCCCGACAAACATTTCGACCTCGAAACG GTTCTCCAGGCTGCTAAAATCCGCCCGCTCTCGGTGGTTGCTGGAAACTCTTTCGTCGGTTTCTTCCATCCAGAAGGGATGGATGAGGCGGGATTCGACT TCTTACATGGAGCTATGTCGTTCGACAATATTTGGGACGAGATCAGCAGCAACGGTAAAGAAGAAGAACCCCATTTGTACATTGTCAGTTGGAACGACCA TTTTTTCGTCCTGAAAATCGAGGCAGATGCTTACTACATAATCGACACCTTGGGCGAGAGGCTGTTTGAAGGATGCAATCAGGCCTACATTCTCAAGTTC GACAAAGGTACCGTTATACGCAAAATGCCAGACAACGATGTGACCATTTTGGAGGATGCAACGAAGAGCGAGGAGGAAGAAGGTGAAGTGGTGTGCCGAG GGAAAGACTCGTGCAAGGAATACATAAAGAGCTTCTTGGCAGCTATACCGATTAGGGAACTGCAGGCGGACATCAAGAAAGGTCTCATGGCGTCTACGCC TGTTCATCAGAGACTGCAGATCGAGTTCCACTACACTACTACGATAGAACCGACTCTGGAATCGGACCAGTAA
AA sequence Show only first row Show all	>Lus10029364 pacid=23139811 polypeptide=Lus10029364 locus=Lus10029364.g ID=Lus10029364.BGIv1.0 annot-version=v1.0 MVVKMMRWPWPPLVSKKFDVTLVVKRLEGLDLAAGEKLTVEIRWKGPKFALGSFRRRVKRSFTQEAAAAAVFGDGSLSSSDEETGTGNEGGVTAEWNEEF QNICALSPYKENAFHPWEIAFSVFNDMNQVPKKKVSPMGTALLNLAEFASRAGEDQFELSLPLVPGTDCHASLLISLSLLELRITPETMIPVTLSSPRSA EPVANGKEEVSAIKAGLRKVKIFKDYVSIQRVKKKPYREEEGGSEGRSSSRSEDGEYNYYPFDSDSLDDFEQGESDEVPSVRKSFSYGSLAYANGLGGSS YYNVGRNDLDEDWVYYSNRKSDVGSSSQISDIDPSVSEPPPPPPPQLQSKGEPLLKKTYGEEGGDDIDFDRRQLSSDEARRKAEGDSSANRSSMSDFGDD SFTVGSWEQKEVVSRDRNMKLLAEVFFASIDQRSERAAGESACTALVAVIADWFQCNRDAMPVKSQFDSLIRDGSLEWRNLCENETYMERFPDKHFDLET VLQAAKIRPLSVVAGNSFVGFFHPEGMDEAGFDFLHGAMSFDNIWDEISSNGKEEEPHLYIVSWNDHFFVLKIEADAYYIIDTLGERLFEGCNQAYILKF DKGTVIRKMPDNDVTILEDATKSEEEEGEVVCRGKDSCKEYIKSFLAAIPIRELQADIKKGLMASTPVHQRLQIEFHYTTTIEPTLESDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11760			unknown protein		Lus10029364 [exp]	0	1
AT2G44520		COX10	cytochrome c oxidase 10 (.1)		Lus10043358 [exp]	4.0	0.7163
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10019197 [exp]	6.9	0.7122
AT4G28980		CAK1AT, CDKF;1	CYCLIN-DEPENDENT KINASE F;1, C...		Lus10023659 [exp]	17.1	0.7010
AT2G44520		COX10	cytochrome c oxidase 10 (.1)		Lus10019514 [exp]	18.2	0.6683
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030456 [exp]	25.9	0.6724
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Lus10025071 [exp]	26.2	0.6589
AT4G29270			HAD superfamily, subfamily III...		Lus10043042 [exp]	32.7	0.6582
AT1G72430			SAUR-like auxin-responsive pro...		Lus10037443 [exp]	34.8	0.6650
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10035695 [exp]	40.9	0.6699
AT2G37035			unknown protein		Lus10026520 [exp]	54.9	0.6629

Compare expression of checked genes

Lus10029364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.