Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44150 327 / 3e-114 unknown protein AT3G11800 295 / 2e-101 unknown protein AT2G15910 254 / 1e-83 CSL zinc finger domain-containing protein (.1.2) AT3G48630 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016181 [exp] 473 / 2e-171 AT3G44150 328 / 2e-114 unknown protein Lus10021005 [exp] 265 / 9e-90 AT3G44150 274 / 1e-93 unknown protein Lus10023845 [exp] 263 / 9e-89 AT3G44150 276 / 3e-94 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G068000 [exp] 355 / 2e-125 AT3G44150 342 / 4e-120 unknown protein Potri.006G201600 [exp] 350 / 5e-123 AT3G44150 330 / 2e-115 unknown protein Potri.004G146800 [exp] 265 / 1e-89 AT3G11800 271 / 5e-92 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029366 pacid=23139827 polypeptide=Lus10029366 locus=Lus10029366.g ID=Lus10029366.BGIv1.0 annot-version=v1.0 ATGGCGGCGACTACTCCTTTCAACCTCACCGACCTCCTCCTTCTATCTTTAACCATCTCCTCCTTACTTTTCGCCGCCAAATCGGACGACACAAACCGCG TCTTCTCCCCTTGCGCCGATACCAAGGTACAGTCGTCCGACGGCTACACGTTCGGGATAGCCTTCGCTTCCAGGAGCGCTTTCTATAACAACAGAAATAC TAGCGGCACCCAGCTGTCTCCCTGTGACAGTAGACTCGGTCTCGCCGGAAATGCTCAGGTCTCCGTCTTCAGGCCGAAAGTTGATGAGATCTCTCTTCTT ACCATCAACACCTCCTCTTTCTCCCCGGAAAACGTTGGTGGATATATGGTTGCATTCGGTGGTCGAAAATACGCTGCCAGGTCTCTACCTGCGTTTGTCG CAAATGGTACATACACTGTGACAAGTTATACCCTGGTGCTCGAATTCCAGAAAGGCCGGCTGGAAAACCTGTACTGGAAAAGAGACGGTTGCGCGAAATG TGGTGGTCCAAACAGTCAAGGGATGGTCTGCCTCAACAACCAGGACTGTGCCATCAGAACCACGAGCTGCAAAAACCACAACGGGAATGTCGACTGCAGC ATAGGGATACAGCTGGCGTTCTCTGGCACAGACAAGCACCTCCGGGTTCTCAACTCGTGGTATGAAGTTGAGAATATGCGGCAGTACTCTCTGTTCAAGC TCTACTCGAATCTCAGGGACTCCTTAACCAGCCAGTACGACTCCATATTCAACTAG
AA sequence Show only first row Show all	>Lus10029366 pacid=23139827 polypeptide=Lus10029366 locus=Lus10029366.g ID=Lus10029366.BGIv1.0 annot-version=v1.0 MAATTPFNLTDLLLLSLTISSLLFAAKSDDTNRVFSPCADTKVQSSDGYTFGIAFASRSAFYNNRNTSGTQLSPCDSRLGLAGNAQVSVFRPKVDEISLL TINTSSFSPENVGGYMVAFGGRKYAARSLPAFVANGTYTVTSYTLVLEFQKGRLENLYWKRDGCAKCGGPNSQGMVCLNNQDCAIRTTSCKNHNGNVDCS IGIQLAFSGTDKHLRVLNSWYEVENMRQYSLFKLYSNLRDSLTSQYDSIFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44150			unknown protein		Lus10029366 [exp]	0	1
AT1G30890			Integral membrane HRF1 family ...		Lus10027039 [exp]	1.0	0.9539
AT4G10040		CYTC-2	cytochrome c-2 (.1)		Lus10028892 [exp]	1.7	0.9510
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10032113 [exp]	2.8	0.9538
AT1G65980		TPX1	thioredoxin-dependent peroxida...		Lus10023662 [exp]	4.2	0.9238
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Lus10001313 [exp]	4.5	0.9412
AT4G37830			cytochrome c oxidase-related (...		Lus10019250 [exp]	5.3	0.9429
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Lus10010594 [exp]	5.8	0.9150
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10035655 [exp]	5.9	0.9021
AT4G36750			Quinone reductase family prote...		Lus10026035 [exp]	7.5	0.9064
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10008470 [exp]	10.0	0.9236

Compare expression of checked genes

Lus10029366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.