Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06500 88 / 8e-21 MADS AGL96 AGAMOUS-like 96 (.1) AT3G05860 79 / 1e-17 MADS MADS-box transcription factor family protein (.1.2.3) AT5G26650 81 / 3e-17 MADS AGL36 AGAMOUS-like 36 (.1) AT1G65330 79 / 4e-17 MADS AGL37, PHE1 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) AT5G48670 79 / 4e-17 MADS FEM111, AGL80 AGAMOUS-like 80 (.1) AT5G26630 76 / 2e-16 MADS MADS-box transcription factor family protein (.1) AT5G27960 77 / 3e-16 MADS AGL90 AGAMOUS-like 90 (.1) AT1G65300 76 / 3e-16 MADS AGL38, PHE2 PHERES2, AGAMOUS-like 38 (.1) AT2G40210 77 / 4e-16 MADS AGL48 AGAMOUS-like 48 (.1) AT1G31640 76 / 1e-15 MADS AGL92 AGAMOUS-like 92 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016180 [exp] 336 / 1e-117 AT5G26650 84 / 5e-19 AGAMOUS-like 36 (.1) Lus10004150 [exp] 102 / 1e-25 AT1G65330 84 / 8e-19 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) Lus10021399 [exp] 96 / 3e-24 AT5G48670 84 / 1e-19 AGAMOUS-like 80 (.1) Lus10014883 [exp] 84 / 7e-19 AT5G48670 114 / 1e-29 AGAMOUS-like 80 (.1) Lus10022316 [exp] 80 / 1e-17 AT5G48670 131 / 2e-36 AGAMOUS-like 80 (.1) Lus10012154 [exp] 77 / 5e-17 AT5G06500 65 / 7e-13 AGAMOUS-like 96 (.1) Lus10007592 [exp] 77 / 5e-17 AT5G26650 66 / 8e-13 AGAMOUS-like 36 (.1) Lus10032108 [exp] 77 / 2e-16 AT5G48670 180 / 9e-55 AGAMOUS-like 80 (.1) Lus10014578 [exp] 77 / 2e-16 AT5G48670 182 / 5e-56 AGAMOUS-like 80 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G201700 [exp] 132 / 6e-36 AT5G48670 120 / 2e-30 AGAMOUS-like 80 (.1) Potri.016G068132 [exp] 124 / 2e-34 AT5G48670 125 / 1e-34 AGAMOUS-like 80 (.1) Potri.005G002400 [exp] 102 / 8e-26 AT5G48670 222 / 4e-71 AGAMOUS-like 80 (.1) Potri.013G018100 [exp] 85 / 1e-19 AT5G48670 187 / 1e-58 AGAMOUS-like 80 (.1) Potri.013G001700 [exp] 75 / 7e-16 AT5G48670 203 / 3e-64 AGAMOUS-like 80 (.1) Potri.013G107600 [exp] 69 / 4e-14 AT1G22590 117 / 9e-34 AGAMOUS-like 87 (.1.2) Potri.009G079000 [exp] 48 / 1e-06 AT4G37940 293 / 3e-101 AGAMOUS-like 21 (.1) Potri.001G284600 [exp] 48 / 2e-06 AT4G37940 272 / 7e-93 AGAMOUS-like 21 (.1) Potri.001G284301 [exp] 48 / 2e-06 AT4G37940 272 / 7e-93 AGAMOUS-like 21 (.1) Potri.002G092300 [exp] 48 / 2e-06 AT1G22130 313 / 1e-105 AGAMOUS-like 104 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10029367 pacid=23139969 polypeptide=Lus10029367 locus=Lus10029367.g ID=Lus10029367.BGIv1.0 annot-version=v1.0 ATGTCGAGGCGGAAGAGGCTGATAAGGTGGATAGCCAACGATGTTGCTCGAAAGGCGTGCTTTCGAAAGAGGCAGTCTGGGCTGATCAAGAAAGTGAAGG AGTTGTCAACTTTATGTGACATTCCGGGGATGTGTGTGATATACAACCCCGTCGAGGAGTTGTCGCCTTCTCAGCCGCTGCAGCCATCGGACCCACCGAC GATTTGGCCGTCGCGTGAGGTGGCAGTGCAGTTGATGGAGAGGTTCTTGGCCTTGCCAGCCGTGGAGCGCACCAAGAAGATGACCAACCAGCTGGGATAT CTTCGAGAAGTGGTCATGAAGGCGCAGGAGAAACAGGGGCAAGAATCGAAGAAAATACAGGACATGGAGTTCGCGCTTTTGATGGATGAGGTTCGTTACG GGAAGGGGCTGGAAGGACTAGACATGGAGCAATGCAAAAGCTTGACTTGGCTTATCCGGTTTAAGATTCAAGAGATTCGGAGGCGAATGGAGTTCCTCGG GGCTACTCAACAGGTGGAGCCACATCATGGTCCGCTGCAGGGGATGAACCAGATTGTCACAGGGACAATGGACCATCCCCTACAGGGGAGGAATCATATT GTCGCGGGGACAATGGACCATCCTATTTATATCGATGAGGACGGTGGTTCCTCATCGTTGTTGGATGGATCCGAAGGAAGTACTGTTGAGACGGAGTTGG TGCCCAACAAGCATGACGGTATGGATGTGGAGCTTAATCTAGGGTTGGGGAGAAAGTGA
AA sequence Show only first row Show all	>Lus10029367 pacid=23139969 polypeptide=Lus10029367 locus=Lus10029367.g ID=Lus10029367.BGIv1.0 annot-version=v1.0 MSRRKRLIRWIANDVARKACFRKRQSGLIKKVKELSTLCDIPGMCVIYNPVEELSPSQPLQPSDPPTIWPSREVAVQLMERFLALPAVERTKKMTNQLGY LREVVMKAQEKQGQESKKIQDMEFALLMDEVRYGKGLEGLDMEQCKSLTWLIRFKIQEIRRRMEFLGATQQVEPHHGPLQGMNQIVTGTMDHPLQGRNHI VAGTMDHPIYIDEDGGSSSLLDGSEGSTVETELVPNKHDGMDVELNLGLGRK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06500	MADS	AGL96	AGAMOUS-like 96 (.1)		Lus10029367 [exp]	0	1
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10023069 [exp]	8.1	0.9627
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10034229 [exp]	11.8	0.9558
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10039234 [exp]	12.2	0.9457
AT3G62650			unknown protein		Lus10017613 [exp]	18.3	0.9540
AT2G42350			RING/U-box superfamily protein...		Lus10005104 [exp]	19.6	0.9431
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Lus10033955 [exp]	20.4	0.9298
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021455 [exp]	23.0	0.9494
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10004191 [exp]	25.9	0.9465
AT5G40690			unknown protein		Lus10015261 [exp]	26.2	0.9159
AT4G36670		AtPMT6, AtPLT6	polyol/monosaccharide transpor...		Lus10026032 [exp]	27.3	0.8648

Compare expression of checked genes

Lus10029367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.