Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11820 431 / 3e-153 PEN1, AT-SYR1, ATSYR1, ATSYP121, SYP121 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) AT1G11250 355 / 2e-123 ATSYP125, SYP125 syntaxin of plants 125 (.1) AT1G61290 355 / 2e-123 ATSYP124, SYP124 syntaxin of plants 124 (.1) AT3G52400 356 / 5e-123 ATSYP122, SYP122 syntaxin of plants 122 (.1) AT4G03330 332 / 6e-114 ATSYP123, SYP123 syntaxin of plants 123 (.1) AT3G03800 251 / 2e-82 ATSYP131, SYP131 syntaxin of plants 131 (.1) AT5G08080 239 / 9e-78 ATSYP132, SYP132 syntaxin of plants 132 (.1.2.3) AT1G08560 237 / 6e-77 KN, ATSYP111, SYP111 KNOLLE, syntaxin of plants 111 (.1) AT2G18260 199 / 7e-62 ATSYP112, SYP112 syntaxin of plants 112 (.1) AT5G16830 50 / 1e-06 ATSYP21, ATPEP12, SYP21, PEP12P syntaxin of plants 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016173 [exp] 529 / 0 AT3G11820 432 / 2e-152 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10013589 [exp] 471 / 5e-169 AT3G11820 437 / 2e-155 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10021263 [exp] 472 / 1e-168 AT3G11820 436 / 3e-154 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10018441 [exp] 353 / 2e-122 AT1G61290 491 / 4e-177 syntaxin of plants 124 (.1) Lus10011244 [exp] 351 / 1e-121 AT1G61290 487 / 2e-175 syntaxin of plants 124 (.1) Lus10020089 [exp] 352 / 4e-121 AT1G61290 467 / 2e-166 syntaxin of plants 124 (.1) Lus10006735 [exp] 348 / 2e-120 AT1G61290 491 / 3e-177 syntaxin of plants 124 (.1) Lus10042527 [exp] 261 / 3e-86 AT1G08560 391 / 2e-137 KNOLLE, syntaxin of plants 111 (.1) Lus10021988 [exp] 260 / 1e-85 AT1G08560 388 / 2e-136 KNOLLE, syntaxin of plants 111 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G068600 [exp] 453 / 7e-162 AT3G11820 421 / 5e-149 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.006G202200 [exp] 438 / 5e-156 AT3G11820 412 / 3e-145 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.011G043700 [exp] 362 / 7e-126 AT1G61290 456 / 3e-163 syntaxin of plants 124 (.1) Potri.004G035400 [exp] 353 / 1e-122 AT1G61290 490 / 8e-177 syntaxin of plants 124 (.1) Potri.013G053200 [exp] 265 / 8e-88 AT1G08560 430 / 8e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.019G030800 [exp] 258 / 7e-85 AT1G08560 431 / 3e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.019G036700 [exp] 251 / 2e-82 AT3G03800 391 / 1e-137 syntaxin of plants 131 (.1) Potri.007G123000 [exp] 220 / 1e-69 AT3G03800 300 / 1e-100 syntaxin of plants 131 (.1) Potri.007G023100 [exp] 209 / 4e-66 AT2G18260 352 / 3e-122 syntaxin of plants 112 (.1) Potri.005G121300 [exp] 193 / 6e-60 AT2G18260 356 / 6e-124 syntaxin of plants 112 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00804 [flax] [poplar] Syntaxin Syntaxin CL0445 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10029373 pacid=23139806 polypeptide=Lus10029373 locus=Lus10029373.g ID=Lus10029373.BGIv1.0 annot-version=v1.0 ATGTCAACCCAGATCCCCCCTTCCACCACCGGCGTCAACCTCGACAAGTTCTTCCAGGACGTCGAGACAATCAAAGAAGAGCTCAAGGACCTGGAGAAGC TCAATTCCAGCCTCCAGTCTTCCCACGAGCACAGCAAGACTTTACACCACGCCAAAGCCGTCAAGGACCTCCGAGCTCAGATGGACTCTGACGTCTCCAC TGCTCTCAAGAAGGCCAAGCTGATTAAAGTTCGGCTCGAGGCTCTAGATCGGTCCAATGCTTCTCATCGGAGTCTCCCCGGTTGCGGACCCGGGTCGTCG TCCGACCGGACCCGGACTTCCGTGGTCAACGGGCTGAGGAAGAAGCTCAAGGATTCCATGGAAGGATTTAATGCATTGAGAGGGAAGATCTCGTCGGAGT ATAGGGAGACTGTTGAGAGGAGGTACTTTACTGTCACTGGAGAGAATCCTGATGATAAGACTCTCGATCGTCTGATCTCAACAGGGGAGAGCGAGACGTT TCTCCAGAAGGCGATTGAGGAGCAAGGAAGGGGTCGAGTGCTGGACACAATCAACGAGATTCAGGAGAGGCACGACGCGGTGAAGGACATGGAGAAGAAC CTGAAGGAGCTGCATCAGGTGTTCTTGGACATGGCGGTACTGGTGGAAGCACAGGGGGAGCAGTTAGACGATATCGAGAGCAATATGCAGAGAGCAAGCT CGTTCGTCCGGGGCGGTACTCAGCAGTTGCAGACTGCGAGAGTTCTGCAGAAGAACACCAGGAAATGGACTTGCTATGCCATCTCCATCTTGCTGGTGAT CATCATCCTTGTGGTGTTGTTCGTCGTCAAGCCATGGAACAATGGCGGTGGAGGTGGCGGCAGTGGCAATCAACCTGCCCCTGCTCAAAATCAACCTCCC CCTGCTCAGACTCCGCCCTCAGCGCCAGGAGCGTAG
AA sequence Show only first row Show all	>Lus10029373 pacid=23139806 polypeptide=Lus10029373 locus=Lus10029373.g ID=Lus10029373.BGIv1.0 annot-version=v1.0 MSTQIPPSTTGVNLDKFFQDVETIKEELKDLEKLNSSLQSSHEHSKTLHHAKAVKDLRAQMDSDVSTALKKAKLIKVRLEALDRSNASHRSLPGCGPGSS SDRTRTSVVNGLRKKLKDSMEGFNALRGKISSEYRETVERRYFTVTGENPDDKTLDRLISTGESETFLQKAIEEQGRGRVLDTINEIQERHDAVKDMEKN LKELHQVFLDMAVLVEAQGEQLDDIESNMQRASSFVRGGTQQLQTARVLQKNTRKWTCYAISILLVIIILVVLFVVKPWNNGGGGGGSGNQPAPAQNQPP PAQTPPSAPGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10029373 [exp]	0	1
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10016173 [exp]	1.0	0.9011
AT3G09830			Protein kinase superfamily pro...		Lus10026524 [exp]	3.5	0.8626
AT5G20050			Protein kinase superfamily pro...		Lus10013659 [exp]	3.6	0.8093
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10019444 [exp]	6.8	0.7981
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10015297 [exp]	14.3	0.8051
AT1G49050			Eukaryotic aspartyl protease f...		Lus10042982 [exp]	15.2	0.8485
AT1G54320			LEM3 (ligand-effect modulator ...		Lus10001834 [exp]	19.4	0.8329
AT1G24560			unknown protein		Lus10029143 [exp]	24.0	0.7957
AT1G56130			Leucine-rich repeat transmembr...		Lus10031199 [exp]	24.5	0.7816
AT2G19130			S-locus lectin protein kinase ...		Lus10039762 [exp]	29.3	0.7696

Compare expression of checked genes

Lus10029373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.