Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12350 369 / 1e-128 ATCOAB 4-phospho-panto-thenoylcysteine synthetase (.1) AT5G02080 352 / 2e-122 DNA / pantothenate metabolism flavoprotein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016172 [exp] 558 / 0 AT1G12350 398 / 6e-140 4-phospho-panto-thenoylcysteine synthetase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G090500 [exp] 426 / 6e-151 AT1G12350 413 / 8e-146 4-phospho-panto-thenoylcysteine synthetase (.1) Potri.005G170600 [exp] 417 / 3e-147 AT1G12350 363 / 3e-126 4-phospho-panto-thenoylcysteine synthetase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF04127 [flax] [poplar] DFP DNA / pantothenate metabolism flavoprotein
Representative CDS sequence Show only first row Show all	>Lus10029374 pacid=23139961 polypeptide=Lus10029374 locus=Lus10029374.g ID=Lus10029374.BGIv1.0 annot-version=v1.0 ATGGAGTCGGCTGTGAATGGATCAGGACAAGAACTCTCTCCAGAAGAAGCAGCGGCTTCCTTCTTCAGCTCAGCTCCTTCACTCAAGGTGAAGGACAATC TGACCGACAGACTAACTGAGTTCATCGAGATCAATTCTGCTGTAACAGGAGATGGAGGTGGAAGACCTAGGAAGGTTGTGTGTGTCACTTCTGGTGGCAC CACAGTTCCATTGGAGCAGCGCTGCGTTCGTTACATTGATAACTTCAGTTCAGGCCATAGAGGAGCGACATCAGCTGAGTACTTCATTAAGGCTGGCTAT GCTGTGGTTTTTCTGTACAGGAGGGGAACCATCCTGCCATATACTCGCTCTCTTCCTGACGATCCACTGCTGGAATGTTTTGAGGTTGGTGAAGATGCCA ACATTCAAGTACGGCAGTCATATTCAGAAGCAGTGAAGTCGTCGGTTAGCAATCATCACGCTGCTTTAGCAGACCACCTACTCTTAAAACTTCCTTTCAC TACCATATTTGAGTATCTCCAGATGTTACAAATTATCGCGAAAGCAATGAGGCCTCTCGGGCCACGTTCCATGTTTTATCTTGCTGCTGCTGTGTCAGAC TTCTACGTTCCATGGGAGAGCATGGCAGAGCACAAGATTCAGTCGGCATCCGGCCCTCTGGATATGCGACTGGTTCAAGTGCCGAAAATGCTCTCGATCC TGAAGAAAGATTGGGCTCCATTGGCCTTTTGCATATCATTCAAGTTGGAGACGGATTCGAAGATCCTGCTAGAGAAGGCGGAGATGGCTCTTCGGAAGTA CAAGATGCACATGGTGATAGCGAACGAGCTGCTGACTCGTAAAGAAGTGGTTACAGTGGTTACGATGGACGGGAATATTCCGGTTCACCGGCGGCCTGAT TCTGATGTGGAACAACCCCTCATTGAACTCATCAGGGACCAGCATTCCACTTACATCAAGAACAACTAA
AA sequence Show only first row Show all	>Lus10029374 pacid=23139961 polypeptide=Lus10029374 locus=Lus10029374.g ID=Lus10029374.BGIv1.0 annot-version=v1.0 MESAVNGSGQELSPEEAAASFFSSAPSLKVKDNLTDRLTEFIEINSAVTGDGGGRPRKVVCVTSGGTTVPLEQRCVRYIDNFSSGHRGATSAEYFIKAGY AVVFLYRRGTILPYTRSLPDDPLLECFEVGEDANIQVRQSYSEAVKSSVSNHHAALADHLLLKLPFTTIFEYLQMLQIIAKAMRPLGPRSMFYLAAAVSD FYVPWESMAEHKIQSASGPLDMRLVQVPKMLSILKKDWAPLAFCISFKLETDSKILLEKAEMALRKYKMHMVIANELLTRKEVVTVVTMDGNIPVHRRPD SDVEQPLIELIRDQHSTYIKNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12350		ATCOAB	4-phospho-panto-thenoylcystein...		Lus10029374 [exp]	0	1
AT3G49000			RNA polymerase III subunit RPC...		Lus10033989 [exp]	2.4	0.7666
AT4G20070		ATAAH	allantoate amidohydrolase (.1)		Lus10038372 [exp]	6.0	0.7140
AT1G01760			adenosine deaminases;RNA bindi...		Lus10017815 [exp]	11.2	0.6592
AT1G01770			unknown protein		Lus10036349 [exp]	25.7	0.7330
AT1G16040			unknown protein		Lus10015585 [exp]	31.8	0.7149
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10026861 [exp]	32.1	0.6859
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Lus10012844 [exp]	77.1	0.6956
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Lus10015612 [exp]	82.6	0.6669
AT1G55080		MED9	unknown protein		Lus10003788 [exp]	86.1	0.6499
AT1G11410			S-locus lectin protein kinase ...		Lus10005053 [exp]	87.3	0.6904

Compare expression of checked genes

Lus10029374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.